qsmooth
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see qsmooth.
Smooth quantile normalization
Bioconductor version: 3.9
Smooth quantile normalization is a generalization of quantile normalization, which is average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.
Author: Stephanie C. Hicks [aut, cre] 
, Kwame Okrah [aut], Hector Corrada Bravo [aut] , Rafael Irizarry [aut]
Maintainer: Stephanie C. Hicks <shicks19 at jhu.edu>
citation("qsmooth")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("qsmooth")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("qsmooth")| The qsmooth user's guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BatchEffect, Microarray, MultipleComparison, Normalization, Preprocessing, RNASeq, Sequencing, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | CC BY 4.0 |
| Depends | R (>= 3.6.0) |
| Imports | SummarizedExperiment, utils, sva, stats, methods, graphics |
| System Requirements | |
| URL |
See More
| Suggests | bodymapRat, quantro, knitr, rmarkdown, BiocStyle, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | qsmooth_1.0.0.tar.gz |
| Windows Binary | qsmooth_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | qsmooth_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/qsmooth |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/qsmooth |
| Bioc Package Browser | https://code.bioconductor.org/browse/qsmooth/ |
| Package Short Url | https://bioconductor.org/packages/qsmooth/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |