metaMS
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see metaMS.
MS-Based Metabolomics Annotation Pipeline
Bioconductor version: 3.9
MS-based metabolomics data processing and compound annotation pipeline.
Author: Ron Wehrens [aut, cre] (author of GC-MS part), Pietro Franceschi [aut] (author of LC-MS part), Nir Shahaf [ctb], Matthias Scholz [ctb], Georg Weingart [ctb] (development of GC-MS approach), Elisabete Carvalho [ctb] (testing and feedback of GC-MS pipeline)
Maintainer: Ron Wehrens <ron.wehrens at gmail.com>
citation("metaMS")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("metaMS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("metaMS")| runGC | R Script | |
| runLC | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ImmunoOncology, MassSpectrometry, Metabolomics, Software |
| Version | 1.20.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.10), methods, CAMERA, xcms(>= 1.35) |
| Imports | Matrix, tools, robustbase, BiocGenerics |
| System Requirements | |
| URL | https://github.com/rwehrens/metaMS |
See More
| Suggests | metaMSdata, RUnit |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | CluMSID |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | metaMS_1.20.0.tar.gz |
| Windows Binary | metaMS_1.20.0.zip |
| Mac OS X 10.11 (El Capitan) | metaMS_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/metaMS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/metaMS |
| Bioc Package Browser | https://code.bioconductor.org/browse/metaMS/ |
| Package Short Url | https://bioconductor.org/packages/metaMS/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |