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iCNV

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see iCNV.

Integrated Copy Number Variation detection


Bioconductor version: 3.9

Integrative copy number variation (CNV) detection from multiple platform and experimental design.

Author: Zilu Zhou, Nancy Zhang

Maintainer: Zilu Zhou <zhouzilu at pennmedicine.upenn.edu>

Citation (from within R, enter citation("iCNV")):

Installation

To install this package, start R (version "3.6") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iCNV")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iCNV")
iCNV Vignette HTML R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CopyNumberVariation, ExomeSeq, HiddenMarkovModel, ImmunoOncology, SNP, Software, WholeGenome
Version 1.4.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License GPL-2
Depends R (>= 3.3.1), CODEX
Imports fields, ggplot2, truncnorm, tidyr, data.table, dplyr, grDevices, graphics, stats, utils, rlang
System Requirements
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Suggests knitr, rmarkdown, WES.1KG.WUGSC
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iCNV_1.4.0.tar.gz
Windows Binary iCNV_1.4.0.zip
Mac OS X 10.11 (El Capitan) iCNV_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/iCNV
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iCNV
Bioc Package Browser https://code.bioconductor.org/browse/iCNV/
Package Short Url https://bioconductor.org/packages/iCNV/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive