dagLogo

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see dagLogo.

dagLogo: a bioconductor package for visualizeing conserved amino acid sequence pattern in groups based on probability theory

Bioconductor version: 3.9

Visualize significant conserved amino acid sequence pattern in groups based on probability theory.

Author: Jianhong Ou, Haibo Liu, Alexey Stukalov, Niraj Nirala, Usha Acharya, Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at duke.edu>

Citation (from within R, enter citation("dagLogo")):

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("dagLogo")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dagLogo")

biocViews	SequenceMatching, Software, Visualization
Version	1.22.3
In Bioconductor since	BioC 2.13 (R-3.0) (10.5 years)
License	GPL (>=2)
Depends	R (>= 3.0.1), methods, biomaRt, grImport2, grid, motifStack
Imports	pheatmap, Biostrings, UniProt.ws, BiocGenerics, utils
System Requirements
URL

Suggests	XML, BiocStyle, knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	dagLogo_1.22.3.tar.gz
Windows Binary	dagLogo_1.22.3.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	dagLogo_1.22.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/dagLogo
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/dagLogo
Bioc Package Browser	https://code.bioconductor.org/browse/dagLogo/
Package Short Url	https://bioconductor.org/packages/dagLogo/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.9	Source Archive