anamiR
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see anamiR.
An integrated analysis package of miRNA and mRNA expression data
Bioconductor version: 3.9
This package is intended to identify potential interactions of miRNA-target gene interactions from miRNA and mRNA expression data. It contains functions for statistical test, databases of miRNA-target gene interaction and functional analysis.
Author: Ti-Tai Wang [aut, cre], Tzu-Pin Lu [aut], Chien-Yueh Lee[ctb,] Eric Y. Chuang [aut]
Maintainer: Ti-Tai Wang <r04945002 at ntu.edu.tw>
citation("anamiR")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("anamiR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("anamiR")| Introduction to anamiR | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AssayDomain, BiologicalQuestion, DifferentialExpression, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneTarget, Genetics, Microarray, Normalization, Pathways, ResearchField, Sequencing, Software, Technology, WorkflowStep, miRNA |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.5) |
| Imports | stats, DBI, limma, lumi, agricolae, RMySQL, DESeq2, SummarizedExperiment, gplots, gage, S4Vectors |
| System Requirements | |
| URL | https://github.com/AllenTiTaiWang/anamiR |
| Bug Reports | https://github.com/AllenTiTaiWang/anamiR/issues |
See More
| Suggests | knitr, rmarkdown, data.table |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | anamiR_1.12.0.tar.gz |
| Windows Binary | anamiR_1.12.0.zip |
| Mac OS X 10.11 (El Capitan) | anamiR_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/anamiR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/anamiR |
| Bioc Package Browser | https://code.bioconductor.org/browse/anamiR/ |
| Package Short Url | https://bioconductor.org/packages/anamiR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |