affyio
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see affyio.
Tools for parsing Affymetrix data files
Bioconductor version: 3.9
Routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats.
Author: Ben Bolstad <bmb at bmbolstad.com>
Maintainer: Ben Bolstad <bmb at bmbolstad.com>
Citation (from within R, enter
citation("affyio")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("affyio")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DataImport, Infrastructure, Microarray, Software |
| Version | 1.54.0 |
| In Bioconductor since | BioC 1.8 (R-2.3) (18 years) |
| License | LGPL (>= 2) |
| Depends | R (>= 2.6.0) |
| Imports | zlibbioc, methods |
| System Requirements | |
| URL | https://github.com/bmbolstad/affyio |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | affyPara, makecdfenv, SCAN.UPC, sscore |
| Imports Me | affy, affylmGUI, crlmm, ExiMiR, gcrma, oligo, oligoClasses, puma |
| Suggests Me | BufferedMatrixMethods |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | affyio_1.54.0.tar.gz |
| Windows Binary | affyio_1.54.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | affyio_1.54.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/affyio |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/affyio |
| Bioc Package Browser | https://code.bioconductor.org/browse/affyio/ |
| Package Short Url | https://bioconductor.org/packages/affyio/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |