TDARACNE
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see TDARACNE.
Network reverse engineering from time course data.
Bioconductor version: 3.9
To infer gene networks from time-series measurements is a current challenge into bioinformatics research area. In order to detect dependencies between genes at different time delays, we propose an approach to infer gene regulatory networks from time-series measurements starting from a well known algorithm based on information theory. The proposed algorithm is expected to be useful in reconstruction of small biological directed networks from time course data.
Author: Zoppoli P.,Morganella S., Ceccarelli M.
Maintainer: Zoppoli Pietro <zoppoli.pietro at gmail.com>
citation("TDARACNE")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TDARACNE")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TDARACNE")| TDARACNE | R Script | |
| Reference Manual |
Details
| biocViews | Microarray, Software, TimeCourse |
| Version | 1.34.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (13 years) |
| License | GPL-2 |
| Depends | GenKern, Rgraphviz, Biobase |
| Imports | |
| System Requirements | |
| URL |
See More
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| Depends On Me | |
| Imports Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TDARACNE_1.34.0.tar.gz |
| Windows Binary | TDARACNE_1.34.0.zip |
| Mac OS X 10.11 (El Capitan) | TDARACNE_1.34.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TDARACNE |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TDARACNE |
| Bioc Package Browser | https://code.bioconductor.org/browse/TDARACNE/ |
| Package Short Url | https://bioconductor.org/packages/TDARACNE/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |