SVM2CRM
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SVM2CRM.
SVM2CRM: support vector machine for cis-regulatory elements detections
Bioconductor version: 3.9
Detection of cis-regulatory elements using svm implemented in LiblineaR.
Author: Guidantonio Malagoli Tagliazucchi <malagoli at ingm.org>
Maintainer: Guidantonio Malagoli Tagliazucchi <guidantonio.malagolitagliazucchi at unimore.it>
citation("SVM2CRM")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SVM2CRM")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SVM2CRM")| The \Rpackage{SVM2CRM} Package | R Script | |
| Reference Manual | ||
| README | Text | |
| NEWS | Text |
Details
| biocViews | ChIPSeq, ChipOnChip, Preprocessing, Software, SupportVectorMachine |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | GPL-3 |
| Depends | R (>= 3.2.0), LiblineaR, SVM2CRMdata |
| Imports | AnnotationDbi, mclust, GenomicRanges, IRanges, zoo, squash, pls, rtracklayer, ROCR, verification |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SVM2CRM_1.16.0.tar.gz |
| Windows Binary | SVM2CRM_1.16.0.zip |
| Mac OS X 10.11 (El Capitan) | SVM2CRM_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SVM2CRM |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SVM2CRM |
| Package Short Url | https://bioconductor.org/packages/SVM2CRM/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |