SMAD
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see SMAD.
Statistical Modelling of AP-MS Data (SMAD)
Bioconductor version: 3.9
Assigning probability scores to prey proteins captured in affinity purification mass spectrometry (AP-MS) expriments to infer protein-protein interactions. The output would facilitate non-specific background removal as contaminants are commonly found in AP-MS data.
Author: Qingzhou Zhang [aut, cre]
Maintainer: Qingzhou Zhang <zqzneptune at hotmail.com>
citation("SMAD")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SMAD")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SMAD")| SMAD Quick Start | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | MassSpectrometry, Proteomics, Software |
| Version | 1.0.1 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.6.0) |
| Imports | magrittr (>= 1.5), matrixStats, dplyr, stats, tidyr, utils, Rcpp (>= 1.0.0) |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, testthat, BiocStyle |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SMAD_1.0.1.tar.gz |
| Windows Binary | SMAD_1.0.1.zip |
| Mac OS X 10.11 (El Capitan) | SMAD_1.0.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SMAD |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SMAD |
| Bioc Package Browser | https://code.bioconductor.org/browse/SMAD/ |
| Package Short Url | https://bioconductor.org/packages/SMAD/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |