PROPS
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see PROPS.
PRObabilistic Pathway Score (PROPS)
Bioconductor version: 3.9
This package calculates probabilistic pathway scores using gene expression data. Gene expression values are aggregated into pathway-based scores using Bayesian network representations of biological pathways.
Author: Lichy Han
Maintainer: Lichy Han <lhan2 at stanford.edu>
citation("PROPS")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PROPS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PROPS")| PRObabilistic Pathway Scores (PROPS) | HTML | R Script |
| Reference Manual |
Details
| biocViews | Bayesian, Classification, GeneExpression, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | GPL-2 |
| Depends | |
| Imports | bnlearn, reshape2, sva, stats, utils, Biobase |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PROPS_1.6.0.tar.gz |
| Windows Binary | PROPS_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | PROPS_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PROPS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PROPS |
| Bioc Package Browser | https://code.bioconductor.org/browse/PROPS/ |
| Package Short Url | https://bioconductor.org/packages/PROPS/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |