HybridMTest

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see HybridMTest.

Hybrid Multiple Testing

Bioconductor version: 3.9

Performs hybrid multiple testing that incorporates method selection and assumption evaluations into the analysis using empirical Bayes probability (EBP) estimates obtained by Grenander density estimation. For instance, for 3-group comparison analysis, Hybrid Multiple testing considers EBPs as weighted EBPs between F-test and H-test with EBPs from Shapiro Wilk test of normality as weigth. Instead of just using EBPs from F-test only or using H-test only, this methodology combines both types of EBPs through EBPs from Shapiro Wilk test of normality. This methodology uses then the law of total EBPs.

Author: Stan Pounds <stanley.pounds at stjude.org>, Demba Fofana <demba.fofana at stjude.org>

Maintainer: Demba Fofana <demba.fofana at stjude.org>

Citation (from within R, enter citation("HybridMTest")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HybridMTest")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HybridMTest")

Hybrid Multiple Testing	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GeneExpression, Genetics, Microarray, Software
Version	1.28.0
In Bioconductor since	BioC 2.10 (R-2.15) (12 years)
License	GPL Version 2 or later
Depends	R (>= 2.9.0), Biobase, fdrtool, MASS, survival
Imports	stats
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HybridMTest_1.28.0.tar.gz
Windows Binary	HybridMTest_1.28.0.zip
Mac OS X 10.11 (El Capitan)	HybridMTest_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/HybridMTest
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HybridMTest
Bioc Package Browser	https://code.bioconductor.org/browse/HybridMTest/
Package Short Url	https://bioconductor.org/packages/HybridMTest/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.9	Source Archive