Genominator
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Genominator.
Analyze, manage and store genomic data
Bioconductor version: 3.9
Tools for storing, accessing, analyzing and visualizing genomic data.
Author: James Bullard, Kasper Daniel Hansen
Maintainer: James Bullard <bullard at stat.berkeley.edu>
Citation (from within R, enter
citation("Genominator")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Genominator")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Genominator")| Plotting with Genominator | R Script | |
| The Genominator User Guide | R Script | |
| Working with the ShortRead Package | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Software |
| Version | 1.38.0 |
| In Bioconductor since | BioC 2.5 (R-2.10) (14.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), methods, RSQLite, DBI (>= 0.2-5), BiocGenerics(>= 0.1.0), IRanges(>= 2.5.27), GenomeGraphs |
| Imports | graphics, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | biomaRt, ShortRead, yeastRNASeq |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Genominator_1.38.0.tar.gz |
| Windows Binary | Genominator_1.38.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | Genominator_1.38.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Genominator |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Genominator |
| Bioc Package Browser | https://code.bioconductor.org/browse/Genominator/ |
| Package Short Url | https://bioconductor.org/packages/Genominator/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |