GISPA
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GISPA.
GISPA: Method for Gene Integrated Set Profile Analysis
Bioconductor version: 3.9
GISPA is a method intended for the researchers who are interested in defining gene sets with similar, a priori specified molecular profile. GISPA method has been previously published in Nucleic Acid Research (Kowalski et al., 2016; PMID: 26826710).
Author: Bhakti Dwivedi and Jeanne Kowalski
Maintainer: Bhakti Dwivedi <bhakti.dwivedi at emory.edu>
citation("GISPA")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GISPA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GISPA")| GISPA:Method for Gene Integrated Set Profile Analysis | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneSetEnrichment, GenomeWideAssociation, Software, StatisticalMethod |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
| License | GPL-2 |
| Depends | R (>= 3.3.2) |
| Imports | Biobase, changepoint, data.table, genefilter, graphics, GSEABase, HH, lattice, latticeExtra, plyr, scatterplot3d, stats |
| System Requirements | |
| URL |
See More
| Suggests | knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GISPA_1.8.0.tar.gz |
| Windows Binary | GISPA_1.8.0.zip |
| Mac OS X 10.11 (El Capitan) | GISPA_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GISPA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GISPA |
| Bioc Package Browser | https://code.bioconductor.org/browse/GISPA/ |
| Package Short Url | https://bioconductor.org/packages/GISPA/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |