BioNetStat
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see BioNetStat.
Biological Network Analysis
Bioconductor version: 3.9
A package to perform differential network analysis, differential node analysis (differential coexpression analysis), network and metabolic pathways view. The reference paper is avaible in https://doi.org/10.3389/fgene.2019.00594.
Author: VinÃcius Jardim, Suzana Santos, André Fujita, and Marcos Buckeridge
Maintainer: Vinicius Jardim <viniciusjc at gmail.com>
citation("BioNetStat")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BioNetStat")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BioNetStat")| 1. Line command tutorial | HTML |
| 2. Interface tutorial | HTML |
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, GeneSetEnrichment, GraphAndNetwork, ImmunoOncology, Metabolomics, Microarray, Network, NetworkInference, Pathways, Proteomics, RNASeq, Sequencing, Software, SystemsBiology |
| Version | 1.4.3 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | GPL (>= 3) |
| Depends | R (>= 3.5), shiny, igraph, shinyBS, pathview |
| Imports | BiocParallel, RJSONIO, whisker, yaml, pheatmap, ggplot2, plyr, utils, stats, RColorBrewer, Hmisc, psych, knitr |
| System Requirements | |
| URL | http://github.com/jardimViniciusC/BioNetStat |
| Bug Reports | http://github.com/jardimViniciusC/BioNetStat/issues |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BioNetStat_1.4.3.tar.gz |
| Windows Binary | BioNetStat_1.4.3.zip |
| Mac OS X 10.11 (El Capitan) | BioNetStat_1.4.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BioNetStat |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BioNetStat |
| Bioc Package Browser | https://code.bioconductor.org/browse/BioNetStat/ |
| Package Short Url | https://bioconductor.org/packages/BioNetStat/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |