ASICS
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ASICS.
Automatic Statistical Identification in Complex Spectra
Bioconductor version: 3.9
With a set of pure metabolite reference spectra, ASICS quantifies concentration of metabolites in a complex spectrum. The identification of metabolites is performed by fitting a mixture model to the spectra of the library with a sparse penalty. The method and its statistical properties are described in Tardivel et al. (2017)
Author: Gaëlle Lefort [aut, cre], Rémi Servien [aut], Patrick Tardivel [aut], Nathalie Vialaneix [aut]
Maintainer: Gaëlle Lefort <gaelle.lefort at inra.fr>
citation("ASICS")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ASICS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ASICS")| ASICS | HTML | R Script |
| ASICS | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Cheminformatics, DataImport, Metabolomics, Software |
| Version | 2.0.1 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.5) |
| Imports | BiocParallel, ggplot2, grDevices, gridExtra, methods, PepsNMR, plyr, quadprog, ropls, stats, SummarizedExperiment, TSdist, utils, Matrix, zoo |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, BiocStyle, testthat, ASICSdata |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ASICS_2.0.1.tar.gz |
| Windows Binary | ASICS_2.0.1.zip |
| Mac OS X 10.11 (El Capitan) | ASICS_2.0.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ASICS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ASICS |
| Bioc Package Browser | https://code.bioconductor.org/browse/ASICS/ |
| Package Short Url | https://bioconductor.org/packages/ASICS/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |