signet
This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see signet.
signet: Selection Inference in Gene NETworks
Bioconductor version: 3.8
An R package to detect selection in biological pathways. Using gene selection scores and biological pathways data, one can search for high-scoring subnetworks of genes within pathways and test their significance.
Author: Alexandre Gouy [aut, cre]
Maintainer: Alexandre Gouy <alexandre.gouy at iee.unibe.ch>
citation("signet")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("signet")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("signet")| signet tutorial | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, GraphAndNetwork, KEGG, NetworkEnrichment, Pathways, Software |
| Version | 1.2.3 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | GPL-2 |
| Depends | R (>= 3.4.0) |
| Imports | graph, igraph, RBGL, graphics, utils, stats, methods |
| System Requirements | |
| URL |
See More
| Suggests | graphite, BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | signet_1.2.3.tar.gz |
| Windows Binary | signet_1.2.3.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | signet_1.2.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/signet |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/signet |
| Bioc Package Browser | https://code.bioconductor.org/browse/signet/ |
| Package Short Url | https://bioconductor.org/packages/signet/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |