cheung2010
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see cheung2010.
resources for genetics of gene expression based on Cheung et al 2010
Bioconductor version: 3.7
Data resources related to the PLoS Biology paper Polymorphic Cis- and Trans-Regulation of Human Gene Expression, including small-footprint smlSet support for 147 hgfocus arrays and corresponding HapMap genotypes at 1.3 million SNP; 0.0.22+ includes cheung_eset... from Leek et al RECOUNT myrna output
Author: Vince Carey <stvjc at channing.harvard.edu>
Maintainer: Vince Carey <stvjc at channing.harvard.edu>
citation("cheung2010")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cheung2010")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cheung2010")| cheungTrans: checking trans eQTL with hgfocus arrays | R Script | |
| Reference Manual |
Details
| biocViews | ExperimentData, HapMap, Homo_sapiens_Data, RNASeqData, SNPData, SequencingData |
| Version | 0.18.0 |
| License | Artistic-2.0 |
| Depends | R (>= 2.13.0), Biobase, GGtools, GenomicRanges, hgfocus.db |
| Imports | AnnotationDbi |
| System Requirements | |
| URL |
See More
| Suggests | SNPlocs.Hsapiens.dbSNP144.GRCh37 |
| Linking To | |
| Enhances | parallel |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | cheung2010_0.18.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/cheung2010 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cheung2010 |
| Package Short Url | https://bioconductor.org/packages/cheung2010/ |
| Package Downloads Report | Download Stats |