Mulder2012
This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Mulder2012.
Predicting functional networks and modules of chromatin factors controlling adult stem cell fate from RNA interference screens
Bioconductor version: 3.7
This package provides functions to reproduce results and figures in Mulder K. et. al. published in Nature Cell Biology 2012 and Wang X. et. al. published in PLoS Computational Biology 2012.
Author: Xin Wang <Xin.Wang at cancer.org.uk>, Florian Markowetz <Florian.Markowetz at cancer.org.uk>
Maintainer: Xin Wang <Xin.Wang at cancer.org.uk>
citation("Mulder2012")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Mulder2012")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Mulder2012")| Main vignette:Posterior association network and enriched functional gene modules inferred from rich phenotypes of gene perturbations | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CancerData, ExperimentData, StemCell |
| Version | 0.20.0 |
| License | Artistic-2.0 |
| Depends | R (>= 2.14), org.Hs.eg.db, KEGG.db |
| Imports | igraph, HTSanalyzeR, PANR, RedeR, pvclust, MASS |
| System Requirements | |
| URL |
See More
| Suggests | snow |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Mulder2012_0.20.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/Mulder2012 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Mulder2012 |
| Package Short Url | https://bioconductor.org/packages/Mulder2012/ |
| Package Downloads Report | Download Stats |