nudge
This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see nudge.
Normal Uniform Differential Gene Expression detection
Bioconductor version: 3.7
Package for normalizing microarray data in single and multiple replicate experiments and fitting a normal-uniform mixture to detect differentially expressed genes in the cases where the two samples are being compared directly or indirectly (via a common reference sample)
Author: N. Dean <nemad at stat.washington.edu> and A. E. Raftery <raftery at stat.washington.edu>
Maintainer: N. Dean <nemad at stat.washington.edu>
citation("nudge")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("nudge")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("nudge")| nudge Overview | R Script | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, Microarray, Software, TwoChannel |
| Version | 1.46.0 |
| In Bioconductor since | BioC 1.8 (R-2.3) (18 years) |
| License | GPL-2 |
| Depends | |
| Imports | stats |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
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| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | nudge_1.46.0.tar.gz |
| Windows Binary | nudge_1.46.0.zip |
| Mac OS X 10.11 (El Capitan) | nudge_1.46.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/nudge |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/nudge |
| Package Short Url | https://bioconductor.org/packages/nudge/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |