mzID
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see mzID.
An mzIdentML parser for R
Bioconductor version: 3.7
A parser for mzIdentML files implemented using the XML package. The parser tries to be general and able to handle all types of mzIdentML files with the drawback of having less 'pretty' output than a vendor specific parser. Please contact the maintainer with any problems and supply an mzIdentML file so the problems can be fixed quickly.
Author: Thomas Lin Pedersen, Vladislav A Petyuk with contributions from Laurent Gatto and Sebastian Gibb.
Maintainer: Thomas Lin Pedersen <thomasp85 at gmail.com>
citation("mzID")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mzID")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mzID")| Using mzID | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, MassSpectrometry, Proteomics, Software |
| Version | 1.18.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | GPL (>= 2) |
| Depends | methods |
| Imports | XML, plyr, parallel, doParallel, foreach, iterators, ProtGenerics |
| System Requirements | |
| URL |
See More
| Suggests | knitr, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | proteomics |
| Imports Me | MSGFgui, MSGFplus, MSnbase, MSnID, Pbase |
| Suggests Me | mzR, RforProteomics |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | mzID_1.18.0.tar.gz |
| Windows Binary | mzID_1.18.0.zip |
| Mac OS X 10.11 (El Capitan) | mzID_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/mzID |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/mzID |
| Package Short Url | https://bioconductor.org/packages/mzID/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |