miRcomp
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see miRcomp.
Tools to assess and compare miRNA expression estimatation methods
Bioconductor version: 3.7
Based on a large miRNA dilution study, this package provides tools to read in the raw amplification data and use these data to assess the performance of methods that estimate expression from the amplification curves.
Author: Matthew N. McCall <mccallm at gmail.com>, Lauren Kemperman <lkemperm at u.rochester.edu>
Maintainer: Matthew N. McCall <mccallm at gmail.com>
citation("miRcomp")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("miRcomp")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("miRcomp")| Assessment and comparison of miRNA expression estimation methods (miRcomp) | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Preprocessing, QualityControl, Software, qPCR |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | GPL-3 | file LICENSE |
| Depends | R (>= 3.2), Biobase(>= 2.22.0), miRcompData |
| Imports | utils, methods, graphics, KernSmooth, stats |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics, shiny |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | miRcomp_1.10.0.tar.gz |
| Windows Binary | miRcomp_1.10.0.zip |
| Mac OS X 10.11 (El Capitan) | miRcomp_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/miRcomp |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/miRcomp |
| Package Short Url | https://bioconductor.org/packages/miRcomp/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |