LiebermanAidenHiC2009
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see LiebermanAidenHiC2009.
Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)
Bioconductor version: 3.6
This package provides data that were presented in the article "Comprehensive mapping of long-range interactions reveals folding principles of the human genome", Science 2009 Oct 9;326(5950):289-93. PMID: 19815776
Author: Wolfgang Huber, Felix Klein
Maintainer: Felix Klein <fklein at embl.de>
citation("LiebermanAidenHiC2009")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("LiebermanAidenHiC2009")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("LiebermanAidenHiC2009")| Exploration of HiC data | R Script | |
| Reference Manual |
Details
| biocViews | ChIPSeqData, ChipOnChipData, DNASeqData, ENCODE, ExperimentData, GEO, Genome, NCI, SequencingData, SmallRNAData, miRNAData |
| Version | 0.16.0 |
| License | LGPL |
| Depends | KernSmooth, IRanges |
| Imports | |
| System Requirements | |
| URL |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | LiebermanAidenHiC2009_0.16.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/LiebermanAidenHiC2009 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/LiebermanAidenHiC2009 |
| Package Short Url | https://bioconductor.org/packages/LiebermanAidenHiC2009/ |
| Package Downloads Report | Download Stats |