domainsignatures
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see domainsignatures.
Geneset enrichment based on InterPro domain signatures
Bioconductor version: 3.6
Find significantly enriched gene classifications in a list of functionally undescribed genes based on their InterPro domain structure.
Author: Florian Hahne, Tim Beissbarth
Maintainer: Florian Hahne <florian.hahne at novartis.com>
citation("domainsignatures")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("domainsignatures")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("domainsignatures")| Gene set enrichment using InterPro domain signatures | R Script | |
| Reference Manual |
Details
| biocViews | Annotation, GeneSetEnrichment, Pathways, Software |
| Version | 1.38.0 |
| In Bioconductor since | BioC 2.3 (R-2.8) (15.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.4.0), KEGG.db, prada, biomaRt, methods |
| Imports | AnnotationDbi |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | domainsignatures_1.38.0.tar.gz |
| Windows Binary | domainsignatures_1.38.0.zip |
| Mac OS X 10.11 (El Capitan) | domainsignatures_1.38.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/domainsignatures |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/domainsignatures |
| Package Short Url | https://bioconductor.org/packages/domainsignatures/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |