EpiDISH

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see EpiDISH.

Epigenetic Dissection of Intra-Sample-Heterogeneity

Bioconductor version: 3.6

EpiDISH is a R package to infer the proportions of a priori known cell subtypes present in a sample representing a mixture of such cell-types. Inference proceeds via one of 3 methods (Robust Partial Correlations-RPC, Cibersort (CBS), Constrained Projection (CP)), as determined by user.

Author: Andrew E. Teschendorff <a.teschendorff at ucl.ac.uk>, Shijie C. Zheng<shijieczheng at gmail.com>

Maintainer: Shijie Charles Zheng<shijieczheng at gmail.com>

Citation (from within R, enter citation("EpiDISH")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EpiDISH")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DNAMethylation, DifferentialMethylation, Epigenetics, MethylationArray, Software
Version	1.0.0
In Bioconductor since	BioC 3.6 (R-3.4) (6.5 years)
License	GPL-2
Depends	R (>= 3.4)
Imports	MASS, e1071, quadprog
System Requirements
URL	https://github.com/sjczheng/EpiDISH
Bug Reports	https://github.com/sjczheng/EpiDISH/issues

Suggests	roxygen2, GEOquery, BiocStyle, knitr, rmarkdown, Biobase, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	EpiDISH_1.0.0.tar.gz
Windows Binary	EpiDISH_1.0.0.zip
Mac OS X 10.11 (El Capitan)	EpiDISH_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/EpiDISH
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/EpiDISH
Package Short Url	https://bioconductor.org/packages/EpiDISH/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive