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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SNPlocs.Hsapiens.dbSNP149.GRCh38")
In most cases, you don't need to download the package archive at all.
SNPlocs.Hsapiens.dbSNP149.GRCh38
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SNP locations for Homo sapiens (dbSNP Build 149)
Bioconductor version: Release (3.5)
SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 149. The source data files used for this package were created by NCBI between November 8-12, 2016, and contain SNPs mapped to reference genome GRCh38.p7 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.
Author: Hervé Pagès
Maintainer: H. Pagès <hpages at fredhutch.org>
Citation (from within R,
enter citation("SNPlocs.Hsapiens.dbSNP149.GRCh38")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SNPlocs.Hsapiens.dbSNP149.GRCh38")
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, Genetics, Homo_sapiens, SNPlocs |
| Version | 0.99.20 |
| License | Artistic-2.0 |
| Depends | BSgenome(>= 1.43.4) |
| Imports | methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome |
| LinkingTo | |
| Suggests | Biostrings, BSgenome.Hsapiens.UCSC.hg38 |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SNPlocs.Hsapiens.dbSNP149.GRCh38_0.99.20.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Package Short Url | http://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP149.GRCh38/ |
| Package Downloads Report | Download Stats |
Documentation »
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