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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pepXMLTab")
In most cases, you don't need to download the package archive at all.
pepXMLTab
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Parsing pepXML files and filter based on peptide FDR.
Bioconductor version: Release (3.5)
Parsing pepXML files based one XML package. The package tries to handle pepXML files generated from different softwares. The output will be a peptide-spectrum-matching tabular file. The package also provide function to filter the PSMs based on FDR.
Author: Xiaojing Wang
Maintainer: Xiaojing Wang <xiaojing.wang at vanderbilt.edu>
Citation (from within R,
enter citation("pepXMLTab")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pepXMLTab")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pepXMLTab")
| R Script | Introduction to pepXMLTab | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | MassSpectrometry, Proteomics, Software |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (3 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.0.1) |
| Imports | XML (>= 3.98-1.1) |
| LinkingTo | |
| Suggests | RUnit, BiocGenerics |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pepXMLTab_1.10.0.tar.gz |
| Windows Binary | pepXMLTab_1.10.0.zip |
| Mac OS X 10.11 (El Capitan) | pepXMLTab_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/pepXMLTab |
| Package Short Url | http://bioconductor.org/packages/pepXMLTab/ |
| Package Downloads Report | Download Stats |
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