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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pRolocGUI")
In most cases, you don't need to download the package archive at all.
pRolocGUI
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Interactive visualisation of spatial proteomics data
Bioconductor version: Release (3.5)
The package pRolocGUI comprises functions to interactively visualise organelle (spatial) proteomics data on the basis of pRoloc, pRolocdata and shiny.
Author: Lisa M Breckels, Thomas Naake and Laurent Gatto
Maintainer: Laurent Gatto <lg390 at cam.ac.uk>, Lisa M Breckels <lms79 at cam.ac.uk>
Citation (from within R,
enter citation("pRolocGUI")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pRolocGUI")
Documentation
| HTML | R Script | pRolocGUI - Interactive visualisation of spatial proteomics data |
| Reference Manual | ||
| Text | NEWS | |
| Video | pRoloc, pRolocdata and pRolocGUI |
Details
| biocViews | GUI, Proteomics, Software, Visualization |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (3 years) |
| License | GPL-2 |
| Depends | methods, R (>= 3.1.0), pRoloc(>= 1.11.1), Biobase, MSnbase(>= 2.1.11) |
| Imports | shiny (>= 0.9.1), scales, dplyr, DT (>= 0.1.40), graphics, utils, ggplot2 |
| LinkingTo | |
| Suggests | pRolocdata, knitr, BiocStyle, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | http://ComputationalProteomicsUnit.github.io/pRolocGUI/ |
| BugReports | https://github.com/ComputationalProteomicsUnit/pRolocGUI/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pRolocGUI_1.10.0.tar.gz |
| Windows Binary | pRolocGUI_1.10.0.zip |
| Mac OS X 10.11 (El Capitan) | pRolocGUI_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/pRolocGUI |
| Package Short Url | http://bioconductor.org/packages/pRolocGUI/ |
| Package Downloads Report | Download Stats |
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