To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genotypeeval")

In most cases, you don't need to download the package archive at all.

genotypeeval

QA/QC of a gVCF or VCF file

Bioconductor version: Release (3.5)

Takes in a gVCF or VCF and reports metrics to assess quality of calls.

Author: Jennifer Tom [aut, cre]

Maintainer: Jennifer Tom <tom.jennifer at gene.com>

Citation (from within R, enter citation("genotypeeval")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genotypeeval")

biocViews	BatchEffect, DataImport, Genetics, SNP, Sequencing, Software, VariantAnnotation
Version	1.8.0
In Bioconductor since	BioC 3.2 (R-3.2) (2 years)
License	file LICENSE
Depends	R (>= 3.3.0), VariantAnnotation
Imports	ggplot2, rtracklayer, BiocGenerics, GenomicRanges, GenomeInfoDb, IRanges, methods, BiocParallel, Rtsne, graphics, stats
LinkingTo
Suggests	rmarkdown, testthat, SNPlocs.Hsapiens.dbSNP141.GRCh38, TxDb.Hsapiens.UCSC.hg38.knownGene
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Source Package	genotypeeval_1.8.0.tar.gz
Windows Binary	genotypeeval_1.8.0.zip
Mac OS X 10.11 (El Capitan)	genotypeeval_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/genotypeeval
Package Short Url	http://bioconductor.org/packages/genotypeeval/
Package Downloads Report	Download Stats

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