To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("UNDO")
In most cases, you don't need to download the package archive at all.
UNDO
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Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions
Bioconductor version: Release (3.5)
UNDO is an R package for unsupervised deconvolution of tumor and stromal mixed expression data. It detects marker genes and deconvolutes the mixing expression data without any prior knowledge.
Author: Niya Wang <wangny at vt.edu>
Maintainer: Niya Wang <wangny at vt.edu>
Citation (from within R,
enter citation("UNDO")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("UNDO")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("UNDO")
| R Script | UNDO Usage | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Software |
| Version | 1.18.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (3.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.15.2), methods, BiocGenerics, Biobase |
| Imports | MASS, boot, nnls, stats, utils |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | UNDO_1.18.0.tar.gz |
| Windows Binary | UNDO_1.18.0.zip |
| Mac OS X 10.11 (El Capitan) | UNDO_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/UNDO |
| Package Short Url | http://bioconductor.org/packages/UNDO/ |
| Package Downloads Report | Download Stats |
Documentation »
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