To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SIMAT")
In most cases, you don't need to download the package archive at all.
SIMAT
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GC-SIM-MS data processing and alaysis tool
Bioconductor version: Release (3.5)
This package provides a pipeline for analysis of GC-MS data acquired in selected ion monitoring (SIM) mode. The tool also provides a guidance in choosing appropriate fragments for the targets of interest by using an optimization algorithm. This is done by considering overlapping peaks from a provided library by the user.
Author: Mo R. Nezami Ranjbar <nranjbar at vt.edu>
Maintainer: Mo R. Nezami Ranjbar <nranjbar at vt.edu>
Citation (from within R,
enter citation("SIMAT")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SIMAT")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SIMAT")
| R Script | SIMAT Usage | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | MassSpectrometry, Metabolomics, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (2.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.4.0), Rcpp (>= 0.11.3) |
| Imports | mzR, ggplot2, grid, reshape2 |
| LinkingTo | |
| Suggests | RUnit, BiocGenerics |
| SystemRequirements | |
| Enhances | |
| URL | http://omics.georgetown.edu/SIMAT.html |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SIMAT_1.8.0.tar.gz |
| Windows Binary | SIMAT_1.8.0.zip |
| Mac OS X 10.11 (El Capitan) | SIMAT_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SIMAT |
| Package Short Url | http://bioconductor.org/packages/SIMAT/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
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