## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AtlasRDF")

DOI: 10.18129/B9.bioc.AtlasRDF    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.5 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see AtlasRDF.

Gene Expression Atlas query and gene set enrichment package.

Bioconductor version: Release (3.5)

Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set.

Author: James Malone, Simon Jupp, Maryam Soleimani

Maintainer: Simon Jupp <jupp at ebi.ac.uk>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AtlasRDF")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AtlasRDF")

 

PDF	R Script	An introduction to the AtlasRDF-R package
PDF		Reference Manual

Details

biocViews	DataImport, DataRepresentation, DifferentialExpression, GeneExpression, GeneSetEnrichment, Microarray, Software
Version	1.12.0
In Bioconductor since	BioC 2.14 (R-3.1) (3.5 years)
License	Apache License 2.0
Depends	R (>= 2.10), hash, SPARQL, methods
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AtlasRDF_1.12.0.tar.gz
Windows Binary	AtlasRDF_1.12.0.zip
Mac OS X 10.11 (El Capitan)	AtlasRDF_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/AtlasRDF
Package Short Url	http://bioconductor.org/packages/AtlasRDF/
Package Downloads Report	Download Stats