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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("synergyfinder")
In most cases, you don't need to download the package archive at all.
synergyfinder
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see synergyfinder.
Calculate and Visualize Synergy Scores for Drug Combinations
Bioconductor version: 3.4
Efficient implementations for all the popular synergy scoring models for drug combinations, including HSA, Loewe, Bliss and ZIP and visualization of the synergy scores as either a two-dimensional or a three-dimensional interaction surface over the dose matrix.
Author: Liye He <liye.he at helsinki.fi>, Jing Tang <jing.tang at helsinki.fi>
Maintainer: Liye He <liye.he at helsinki.fi>
Citation (from within R,
enter citation("synergyfinder")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("synergyfinder")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("synergyfinder")
| R Script | synergyfinder | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Software, Statistical Method |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | Artistic License 2.0 |
| Depends | |
| Imports | drc (>= 2.5-12), reshape2 (>= 1.4.1), kriging (>= 1.1), ggplot2 (>= 2.1.0), gridBase (>= 0.4-7), grid (>= 3.2.4), lattice (>= 0.20-33), gplots (>= 3.0.0), nleqslv (>= 3.0), stats (>= 3.3.0), graphics (>= 3.3.0), grDevices (>= 3.3.0) |
| LinkingTo | |
| Suggests | knitr, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | synergyfinder_1.0.0.tar.gz |
| Windows Binary | synergyfinder_1.0.0.zip |
| Mac OS X 10.9 (Mavericks) | synergyfinder_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/synergyfinder/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/synergyfinder/ |
| Package Downloads Report | Download Stats |
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