To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gcatest")

In most cases, you don't need to download the package archive at all.

gcatest

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see gcatest.

Genotype Conditional Association TEST

Bioconductor version: 3.4

GCAT is an association test for genome wide association studies that controls for population structure under a general class of trait. models.

Author: Wei Hao, Minsun Song, John D. Storey

Maintainer: Wei Hao <whao at princeton.edu>, John D. Storey <jstorey at princeton.edu>

Citation (from within R, enter citation("gcatest")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gcatest")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gcatest")

PDF	R Script	gcat Package
PDF		Reference Manual

biocViews	DimensionReduction, GenomeWideAssociation, PrincipalComponent, SNP, Software
Version	1.4.0
In Bioconductor since	BioC 3.2 (R-3.2) (1.5 years)
License	GPL-3
Depends	R (>= 3.2)
Imports	lfa
LinkingTo
Suggests	knitr, ggplot2
SystemRequirements
Enhances
URL	https://github.com/StoreyLab/gcatest
BugReports	https://github.com/StoreyLab/gcatest/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	gcatest_1.4.0.tar.gz
Windows Binary	gcatest_1.4.0.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks)	gcatest_1.4.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/gcatest/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/gcatest/
Package Downloads Report	Download Stats

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