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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MSGFgui")
In most cases, you don't need to download the package archive at all.
MSGFgui
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see MSGFgui.
A shiny GUI for MSGFplus
Bioconductor version: 3.4
This package makes it possible to perform analyses using the MSGFplus package in a GUI environment. Furthermore it enables the user to investigate the results using interactive plots, summary statistics and filtering. Lastly it exposes the current results to another R session so the user can seamlessly integrate the gui into other workflows.
Author: Thomas Lin Pedersen
Maintainer: Thomas Lin Pedersen <thomasp85 at gmail.com>
Citation (from within R,
enter citation("MSGFgui")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MSGFgui")
Documentation
| HTML | R Script | Using MSGFgui |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GUI, MassSpectrometry, Proteomics, Software, Visualization |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (2.5 years) |
| License | GPL (>= 2) |
| Depends | mzR, xlsx |
| Imports | shiny, mzID(>= 1.2), MSGFplus, shinyFiles (>= 0.4.0), tools |
| LinkingTo | |
| Suggests | knitr, testthat |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | RforProteomics |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | MSGFgui_1.8.0.tar.gz |
| Windows Binary | MSGFgui_1.8.0.zip |
| Mac OS X 10.9 (Mavericks) | MSGFgui_1.8.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/MSGFgui/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/MSGFgui/ |
| Package Downloads Report | Download Stats |
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