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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ImpulseDE")
In most cases, you don't need to download the package archive at all.
ImpulseDE
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This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see ImpulseDE.
Detection of DE genes in time series data using impulse models
Bioconductor version: 3.4
ImpulseDE is suited to capture single impulse-like patterns in high throughput time series datasets. By fitting a representative impulse model to each gene, it reports differentially expressed genes whether across time points in a single experiment or between two time courses from two experiments. To optimize the running time, the code makes use of clustering steps and multi-threading.
Author: Jil Sander [aut, cre], Nir Yosef [aut]
Maintainer: Jil Sander <jil.sander at uni-bonn.de>, Nir Yosef <niryosef at berkeley.edu>
Citation (from within R,
enter citation("ImpulseDE")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ImpulseDE")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ImpulseDE")
| R Script | ImpulseDE | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Software, StatisticalMethod, TimeCourse |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | GPL-3 |
| Depends | graphics, grDevices, stats, utils, parallel, compiler, R (>= 3.2.3) |
| Imports | amap, boot |
| LinkingTo | |
| Suggests | longitudinal, knitr |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/YosefLab/ImpulseDE |
| BugReports | https://github.com/YosefLab/ImpulseDE/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ImpulseDE_1.0.0.tar.gz |
| Windows Binary | ImpulseDE_1.0.0.zip |
| Mac OS X 10.9 (Mavericks) | ImpulseDE_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ImpulseDE/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/ImpulseDE/ |
| Package Downloads Report | Download Stats |
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