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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("furrowSeg")
In most cases, you don't need to download the package archive at all.
furrowSeg
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see furrowSeg.
Furrow Segmentation
Bioconductor version: 3.3
Image feature data and analysis codes for the Guglielmi, Barry et al. paper describing the application of an optogenetics tools to disrupt Drosophila embryo furrowing.
Author: Joseph Barry
Maintainer: Joseph Barry <joseph.barry at embl.de>
Citation (from within R,
enter citation("furrowSeg")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("furrowSeg")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("furrowSeg")
| R Script | Supplementary Methods - Automatic generation of paper figures | |
| R Script | Supplementary Methods - Example furrow segmentation | |
| Reference Manual |
Details
| biocViews | Drosophila_melanogaster_Data, ExperimentData, ReproducibleResearch, Tissue |
| Version | 1.0.2 |
| License | Artistic-2.0 |
| Depends | R (>= 3.3), EBImage |
| Imports | abind, dplyr, locfit, tiff |
| LinkingTo | |
| Suggests | BiocStyle, ggplot2, knitr |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | furrowSeg_1.0.2.tar.gz |
| Windows Binary | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/furrowSeg/ |
| Package Downloads Report | Download Stats |
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