To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("STRINGdb")

In most cases, you don't need to download the package archive at all.

STRINGdb

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see STRINGdb.

STRINGdb (Search Tool for the Retrieval of Interacting proteins database)

Bioconductor version: 3.3

The STRINGdb package provides a R interface to the STRING protein-protein interactions database (http://www.string-db.org).

Author: Andrea Franceschini <andrea.franceschini at isb-sib.ch>

Maintainer: Alexander Roth <alexander.roth at isb-sib.ch>

Citation (from within R, enter citation("STRINGdb")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("STRINGdb")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("STRINGdb")

PDF	R Script	STRINGdb Vignette
PDF		Reference Manual

biocViews	Network, Software
Version	1.12.0
In Bioconductor since	BioC 2.13 (R-3.0) (3 years)
License	GPL-2
Depends	R (>= 2.14.0)
Imports	png, sqldf, plyr, igraph, RCurl, methods, RColorBrewer, gplots, hash, plotrix
LinkingTo
Suggests	RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me	scsR
Imports Me	pwOmics
Suggests Me	PCAN
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	STRINGdb_1.12.0.tar.gz
Windows Binary	STRINGdb_1.12.0.zip
Mac OS X 10.9 (Mavericks)	STRINGdb_1.12.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/STRINGdb/tree/release-3.3
Package Short Url	http://bioconductor.org/packages/STRINGdb/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: