8f8e728b6e5b3653b5b1fbd1f69f5b83 *DESCRIPTION
58832b6070233240e5df4d5fd4ea18bd *LICENSE
601f2a2fa19f4cf06a223e5761726040 *NAMESPACE
d8560a5a93efd3f0150ad9c8ae71dbed *R/gtfToExons.R
a0804a580456bcf470ff4cbc0bef08d8 *R/makeBranchpointWindowForExons.R
1dc82f0f918e276ad3ceaa0dd9b8c329 *R/makeBranchpointWindowForSNP.R
2184323b5d8e5735ea516d3a8aced0ad *R/plotBranchpointWindow.R
2b0ec52713ecf7a2e0ed8d5621115d78 *R/predictBranchpoints.R
18af75f62fa87e0a935326e11b231bde *R/predictionsToSummary.R
0fd87a5df1401076faea779a707f9e94 *R/readQueryFile.R
da3708ddd22f27164cfc356a75d2d990 *R/sysdata.rda
8c5d262cd6123e5480c7b4f01f4c6d60 *build/vignette.rds
e14c356d24b51995bd684a4cedd91dbc *inst/CITATION
46e5df095816adfa362f73eb85bd4a06 *inst/NEWS
f8feacae960c002f2c8f0c911fe018ab *inst/doc/branchpointer.R
2647aa676d1e82c12866edfb65383daa *inst/doc/branchpointer.Rnw
e235a9a18a963370cc86a47e4f75d122 *inst/doc/branchpointer.pdf
319543cace7e013f0cb07d4e0f21888a *inst/extdata/SNP_example.txt
b5359f942dfe927a84c1351cf5cb1dfb *inst/extdata/gencode.v26.annotation.small.gtf
add0e29f2ab746cad726bb7431c0b504 *inst/extdata/intron_example.txt
40d90e8edfab9d850891834f9ec409a2 *inst/scripts/Intron_Annotation_Times.R
b032f1944958f9d6deae866a5b16a1c7 *inst/scripts/NHGRI_GWAS_SNPS.R
dda8898bfe4cd5ab8e4d185e8bb799be *inst/scripts/predictBranchpoints_Times.R
ed38d1e4f0be62655d3fe40a2ca0cb1b *inst/scripts/readQueryFile_Filter_Time.R
ebc846ccf1d3026181d9b7c987d8926a *man/exonsToIntrons.Rd
410ecd2c3756ecf0132fdc547a50d133 *man/getBranchpointSequence.Rd
4bb2b5f3a8ed32439fce19baa8cc3618 *man/getCanonical3SS.Rd
888f8b93b8a8615a89a47ca2b5170378 *man/getExonDists.Rd
a5d60a77ae34b362ae150fe46f505d63 *man/getPPT.Rd
3b8a80a728e99b58084a63a4299bd3d6 *man/getQueryLoc.Rd
8d31b592a9384c00ad35bc44f43f7900 *man/gtfToExons.Rd
cb578e97f24645177f290f47de9fde77 *man/makeBranchpointWindowForExons.Rd
03ca6164ccf3ac5859e6e5155ba0f7a4 *man/makeBranchpointWindowForSNP.Rd
a886dd4f9f38458b16fd487b4b002778 *man/plotBranchpointWindow.Rd
206134743a588338af2eca0a6c8ac974 *man/plotStructure.Rd
012368bd0b15cdd6255278f8fcb9386d *man/predictBranchpoints.Rd
814eb9afc9b08160e3e72f1ae7768c33 *man/predictionsToSummary.Rd
fc52e06959e5a4a1dd039d2d8ab1c774 *man/readQueryFile.Rd
2647aa676d1e82c12866edfb65383daa *vignettes/branchpointer.Rnw
26a1452d1a632f7d6f1beffb9379b20d *vignettes/predictBranchpoints_time.pdf
08d1dca79cd90cad46f75e20136aa53f *vignettes/readQueryFile_time.pdf
