960771ecdb2c56613803057d1c1d135c *DESCRIPTION
e1e62974ae02ddb7af02236e3e5d3949 *NAMESPACE
ce1531ad74dbd203d023b8a66382b7b9 *R/ChIPQC_IF.R
dcb5c8c1360700c7d6c04bcb282c4abf *R/ChIPQCexperiment-class.R
4870ed6755cfa802b29ffd6e743d16a6 *R/ChIPQCsample-class.R
7de7833787444da762ff780906892d7b *R/dbaplots.R
08055eeba9b8f87800afc6a4bdce8896 *R/plots.r
ebf74225334e4e41f371a95a0f7393b7 *R/report.r
612df6d3b5a4aa91878ec0ab2b916077 *R/sampleQC.R
3c53c71fa117a7dc2eb71a2eaf304aeb *R/utilities.R
1e107290c813c24add74749a38a22263 *R/zzz.R
b66eb803bc36e695335b91d0df2b88ef *build/vignette.rds
611049c57721a5264020c67b2691b7fe *data/blacklist_hg19.RData
889b92ab22ccb5ce5e1730ba4e818e05 *data/datalist
f51456423d075f616c0511cd43510d91 *data/example_QCexperiment.RData
10160739db863b5a8fc53f937f770e5d *data/tamoxifen_QC.RData
0f851fd93d5cfcaec258f1d6354c3416 *inst/CITATION
5113b9bb452211ce0948b29b9c2f704f *inst/NEWS.Rd
66498ccd50994dcf71071e963c814e8a *inst/doc/ChIPQC.R
5f7db2dfa44972eee84275b3ddddc50b *inst/doc/ChIPQC.Rnw
7a776ca637508bbb6f98d79f562674cb *inst/doc/ChIPQC.pdf
94246221f5b6a1f68c12929c53709130 *inst/doc/ChIPQCSampleReport.pdf
9232f679268f60f56f5759a9d3a6a0d2 *inst/doc/index.html
7946fb2b4ad0e8db82ffcfd5c49dfbb5 *inst/extdata/blacklist_hg19.bed
5df110abf9e3ec2405af4c7750f624bf *inst/extdata/example_QCexperiment.csv
a8e6c3c4500562f10e19acc7daf9dee2 *inst/extdata/tamoxifenQC.csv
9ba3ce9ceff392599f17b421b72dddb7 *inst/legacy/report.r
7794a8e3c42427dcbf07551b020aab76 *man/ChIPQC-data.Rd
3d8fb3632f6a59f5f40419536f69a4da *man/ChIPQC-deprecated.Rd
e4965840e3c3ce1d319196716fa19897 *man/ChIPQC-package.Rd
356d82b664e0d898be551cce74c9192b *man/ChIPQC.Rd
911316fe42d02b0fe875840679db1d94 *man/ChIPQCexperiment-class.Rd
4b85f89cc1363dfe53b688a26aa36102 *man/ChIPQCreport.Rd
c8923cbbac4d86242346d360f6943afc *man/ChIPQCsample-class.Rd
aff173116afaf555cad2d8a6bae88759 *man/FragmentLengthCrossCoverage-methods.Rd
e9d1bfd7f304b26a767b3e0e61bf5e65 *man/Normalisedaveragepeaksignal-methods.Rd
9e651d913f95be0c6109ef0952f7a3c8 *man/QCannotation-methods.Rd
35ca1260a18702cebd5a9484baff3e9c *man/QCcontrol-methods.Rd
2b261c63733dd8ee987c2996def4534a *man/QCdba-methods.Rd
7d066e84a5ae2631cde493531fa7628f *man/QCmetadata-methods.Rd
79d240184e2bfe21d93789b32e3caff9 *man/QCmetrics-methods.Rd
fd184662d6c8e41666e44d4a2a994a8a *man/QCsample-methods.Rd
26d4088766f547f666421379c2b96ed3 *man/ReadLengthCrossCoverage-methods.Rd
0315fd231fb4ecc214e256589b8b901d *man/RelativeCrossCoverage-methods.Rd
e0746570c1a22739d933c539b40679c1 *man/averagepeaksignal-methods.Rd
805b32da4cabbd883fee407217711c26 *man/coveragehistogram-methods.Rd
46846038c678286b84fc6a70eca11918 *man/crosscoverage-methods.Rd
c1ab112386e8c9d55525e90e4592f045 *man/duplicateRate-methods.Rd
49e908ca5e57230dbdd03739aeb90f8a *man/duplicates-methods.Rd
62a51063e6544ce922f8c637fdd4fa9c *man/flagtagcounts-methods.Rd
7e8054a6d3c52db1eb7080d9ec84c30a *man/fragmentlength-methods.Rd
2973f5ce26af2178825a79b435d475f1 *man/frip-methods.Rd
5d9cfc131655d4d87b1ecf4ea5fe0b24 *man/mapped-methods.Rd
7dc195464b6adc51697f3f6179321344 *man/peaks-methods.Rd
dba925a1b10e053b5ea1441e0ab8b63c *man/plotCC-methods.Rd
998227ab88ead16cc223d818c0076c69 *man/plotCorHeatmap-methods.Rd
8bc61494776be22cd9261a60b46e4722 *man/plotCoverageHist-methods.Rd
73ebf72be9369ad760ca8876cca440fa *man/plotFribl-methods.Rd
303b21a6c01fe8770a3f1dd4d1a2e623 *man/plotFrip-methods.Rd
628fbba604802004320495267eaaa1ba *man/plotPeakProfile-methods.Rd
187c23b4373361d72c5e7203d84b8150 *man/plotPrincomp-methods.Rd
4a1d9880767f7a3058b4bc3b7e9352cb *man/plotRap-methods.Rd
0f770b8465f24ca784ae1a13992e8fd1 *man/plotRegi-methods.Rd
d6d1a49a7ab27439307d1eabb83dbd13 *man/plotSSD-methods.Rd
27f2375e867c4e3f9f95c083682f67f0 *man/readlength-methods.Rd
69f6e29882093ea5f3870f2c8dd3962d *man/reads-methods.Rd
299584f71ed5ba1d641e999aa7a49662 *man/regi-methods.Rd
2b16a93580c60d0c45e4a3d3f787b7bf *man/ribl-methods.Rd
6eaf8109283c6946176ed2074f9a9ce0 *man/rip-methods.Rd
9c7fc160bac7c7e3876ab433b5dab200 *man/ssd-methods.Rd
5f7db2dfa44972eee84275b3ddddc50b *vignettes/ChIPQC.Rnw
e3a0ef7277ca228f2b1b5935d4f7031a *vignettes/ChIPQC.bib
