R (>= 2.10), cluster, survival, multtest
R (>= 2.10), Biobase (>= 2.5.5), methods, BiocGenerics
R (>= 4.0.0), methods, utils, graphics, stats, generics
R (>= 2.1.0), methods, MVCClass, Biobase, graph, Rgraphviz
R (>= 2.6.0), BufferedMatrix (>= 1.3.0), methods
R (>= 2.14.0), Biobase, binom, methods, stats
R (>= 4.0.0), RBGL, graph, methods, RCurl, Rgraphviz, XML,
ggplot2, rmarkdown
R (>= 3.6), stats, utils, graphics, infotheo, lattice,
latticeExtra, httr, jsonlite
R (>= 3.3), mvtnorm, igraph, gsl, Biobase, stats,
LaplacesDemon, Matrix
R (>= 2.15.1), methods, ggplot2, changepoint, wavethresh,
tseries, pvclust, fBasics, grid, reshape, scales
blockmodeling, gplots, testthat, R (>= 3.0.0)
R (>= 3.1),FNN, psych, gtools, zoo, rgl, grid, VennDiagram
R (>= 2.15.0), methods, Biobase, rrcov, flowCore
R (>= 2.11.0), flowCore, flowViz,flowClust
R (>= 2.8.0), Biobase, coda, EBarrays, mgcv
R (>= 2.10.1), Biobase (>= 2.5.5), EBarrays, minet, methods
R (>= 4.0.0), stats, methods, graphics, GGally, network, sna,
scales, matrixStats
R (>= 3.5), Matrix, MASS, locfdr, stats, utils
shiny, sp, gplots, ggplot2, reshape2, RColorBrewer, rhdf5,
R(>= 2.10.0)
R (>= 2.8.0), stats, graphics, grDevices, Biobase, methods
R (>= 2.11.0), cluster, Biobase, methods
R (>= 2.9.0), Biobase, fdrtool, MASS, survival
R (>= 3.3.0), methods, stats, utils, graphics
R (>= 2.13.2), methods, graphics, fdrtool
cluster, gplots, diptest, Biobase, R (>= 3.0.2)
R (>= 3.3.0), stats, gplots, gtools,graphics,base,
utils,grDevices
R (>= 4.0), Rsolnp, snowfall, deSolve, CNORode
data.table, parallel, utils, stats, R (>= 4.1)
R (>= 2.10), methods, BiocGenerics, Biobase
R (>= 2.15.1), BiocStyle, Rgraphviz, rmarkdown, methods,
minet, mclust, reshape2
R (>= 3.3), Biobase, illuminaio, quadprog
R(>= 2.14.0), stats, RColorBrewer, Biobase, methods, ReadqPCR,
qpcR
dplyr, optimalFlowData, rlang (>= 0.4.0)
R (>= 3.0.0), methods, Biobase, BiocGenerics,
R (>= 2.6.2), Biobase (>= 2.5.5), LPE, MASS, methods
R (>= 3.2.1), stats, methods, Rmpfr, gmp
R (>= 3.2), Biobase, rcellminerData (>= 2.0.0)
R (>= 2.6.0), methods, utils, graph, grid
R (>= 2.6.0), BiocGenerics (>= 0.3.2), methods, utils
R (>= 4.0.0), methods, utils, stats, stats4, BiocGenerics (>=
0.53.2)
R (>= 2.10.0), mclust (>= 3.3.1), Biobase (>= 1.15.13),
fields, hwriter (>= 1.1), RColorBrewer, methods
R (>= 2.15.2), methods, BiocGenerics, Biobase
R (>= 4.2.0), methods, BiocGenerics (>= 0.51.1), S4Vectors
R (>= 2.5.0), digest, tools, utils, codetools
Biobase, graphics, grDevices, methods, multtest, stats, tcltk,
utils
Biobase, grDevices, graphics, methods, stats, splines, utils
alabaster.schemas, methods, utils, S4Vectors, rhdf5 (>=
2.47.6), jsonlite, jsonvalidate, Rcpp
stats, CVXR, DescTools, Hmisc, MASS, Matrix, Rdpack,
doParallel, doRNG, energy, foreach, gtools, lme4, lmerTest,
multcomp, nloptr, parallel, utils
igraph, Biobase, survival, MASS, stats, RColorBrewer
cli, lifecycle, Matrix, methods, purrr, R6 (>= 2.4.0),
reticulate (>= 1.41.1), rlang, stats
stats, utils, methods, futile.logger, GCPtools, jsonlite,
httr, rapiclient, yaml, tibble, shiny, DT, miniUI, htmltools,
BiocBaseUtils
AnVILBase, BiocBaseUtils, curl, httr2, jsonlite, methods,
rjsoncons, tibble, utils
httr, httr2, dplyr, jsonlite, methods, tibble
methods, DT, shiny, bigrquery, shinytoastr, DBI, magrittr,
dplyr, lubridate, plotly, ggplot2
AnVILBase, BiocBaseUtils, dplyr, GCPtools (>= 0.99.4), httr,
jsonlite, methods, rlang, stats, tibble, tidyr, utils
AnVIL, AnVILGCP, BiocBaseUtils, BiocManager, httr, jsonlite,
rmarkdown, yaml, readr, whisker, tools, utils, stats
AnVIL, dplyr, jsonlite, rlang, tibble, tidyr, utils, methods,
plyr, stringr
dplyr, Peptides, progress, purrr, ranger, rlang, stats,
stringr, tidyr, toOrdinal, utils
BiocGenerics, pak, cli, glue, gert, gh, gitcreds, httr,
usethis, dplyr, purrr, tibble, methods, rprojroot, stringr,
yaml, tools, utils, rlang, quarto, renv
DT, shiny, jsonlite, graph, tidyr, visNetwork, dplyr, utils,
methods, BiocBaseUtils
bookdown, knitr (>= 1.30), rmarkdown (>= 1.2), stats, utils,
yaml, BiocManager
BiocManager, fs, glue, rlang, styler, usethis (>= 2.0.1)
Biobase, graph (>= 1.9.26), methods, RBGL (>= 1.13.5), tools,
utils, XML, RCurl, RUnit, BiocManager
BiocStyle, bookdown, git2r, httr, knitr, rmarkdown,
rstudioapi, stringr, tools, utils, usethis
R6, RSQLite, Rcpp, XML, chk, fscache (>= 1.0.2), jsonlite,
lgr, lifecycle, methods, openssl, plyr, progress, rappdirs,
sched (>= 1.0.1), sqlq, stats, stringr, tools, withr, yaml
readr, stringr, lpSolve, igraph, dplyr, tibble, tidyr, rjson,
rmarkdown
utils, DT, htmltools, vroom, plyr, dplyr, magrittr, jsonlite,
rapportools, basilisk, reticulate, shinyBS, shinycssloaders,
rintrojs, rlang, markdown
base, ggplot2, ggforce, ggtree, patchwork, ape, methods, Rcpp
(>= 0.12.0), RcppParallel (>= 5.0.1), reshape2, rstan (>=
2.18.1), rstantools (>= 2.4.0), stats, utils, scales
tiff, graphics, stats, utils, reshape2, parallel, doParallel,
grDevices, matrixStats, FME, SpatialTools, sp, vioplot,
FactoMineR, Hmisc
httr, curl, utils, tools, cli, shiny, DT, rjsoncons
furrr, rlang, tibble, ggplot2, ggraph, igraph, purrr, tidyr,
future, stats
matrixStats, MASS, Hmisc, Delaporte, methods, grDevices,
graphics, stats, utils
graphics, stats, utils, methods, survival
shiny, ggraph, igraph, ggiraph, cowplot, htmlwidgets, readxl,
dplyr, readr, purrr, tibble, patchwork, R.utils, shinyWidgets,
colorspace, shinyhelper, shinycssloaders, ggnewscale,
shinydashboard, DT, colourpicker, grDevices, methods, utils,
stats, ggplot2, magrittr, tools
methods, pracma, princurve (>= 2.0.5), scatterplot3d,
RColorBrewer, grDevices, graphics, utils, stats
blaster, future, future.apply, grDevices, igraph, methods,
Rcpp (>= 0.12.0), RcppParallel (>= 5.0.1), reshape2, rstan (>=
2.18.1), rstantools (>= 2.4.0), stats, stringdist, utils,
posterior, visNetwork, dplyr, tidyr, ggplot2, ggforce, scales
methods, class, gplots, mclust, amap, apcluster, foreach,
parallel, doParallel, fastcluster, corrplot, biwt, Biobase,
reshape2, stringr, tibble, tidyr, dplyr, devtools
methods, Rcpp, data.table, RColorBrewer, scales, grid, plyr,
knitr, abind, clue, grDevices, utils, pdist, magrittr,
reshape2, dplyr, tidyr, rlang, BiocStyle, rmarkdown, foreach,
coda
data.table, dplyr, forcats, ggplot2, magrittr, purrr, tidyr,
rlang, stringr, shiny, DT, RColorBrewer, VennDiagram, rio,
scales, shinydashboard, shinyjs, stats, tibble, grid
stats, base, ggplot2, plotly, magrittr, ggpubr, gridExtra,
utils, data.table
matrixStats, gplots, grDevices, methods, graphics, stats,
utils
Biobase, ALL, graphics, stats, utils, cluster
splines, graphics, nor1mix, stats, quantreg
Biobase, flowCore, flowDensity, flowClust, cytometree,
ggplot2, GGally, graphics, grDevices, methods, mrfDepth, stats,
utils
doParallel, dplyr, glmnet, rpart, rpart.plot, stats,
flowCore,grDevices, graphics, utils
gplots, tools, flowCore, grDevices, stats, utils, matrixStats,
methods
igraph, foreach, plyr, stringr, reshape2, methods, Matrix,
graphics, stats, RColorBrewer, circlize, doRNG
MCMCpack, matrixStats, robustbase, aod, e1071
Biobase (>= 1.10.0), RColorBrewer (>= 0.1-3), xtable, lattice,
BiocGenerics
plotrix, clue, parallel, ggplot2, openxlsx, R.utils, flowCore,
flowDensity (>= 1.13.3), SamSPECTRAL, flowPeaks
CompQuadForm, dplyr, ggplot2, KernSmooth, magrittr,
matrixStats, methods, patchwork, parallel, pbapply, reshape2,
rlang, scattermore, stats, statmod, survey, tibble, viridisLite
tensorflow, CatEncoders, matlab, rcdk, stringdist, tokenizers,
webchem, purrr, ttgsea, PRROC, reticulate, stats
graphics, grDevices, methods, stats, utils
stats, MASS, Matrix, ggplot2, gridExtra, methods
Rcpp, basilisk, assertthat, reticulate, Rtsne, irlba
BiocGenerics, methods, rlang, S4Vectors, tidyselect
graphics, grDevices, minpack.lm (>= 1.0-4), stats, utils
grDevices, stats, methods, Matrix, MASS, checkmate, expm,
igraph, Rcpp, RcppArmadillo, RcppParallel, plyr, precrec
Rcpp, Biobase, stats, biwt, gtools, MASS, tools, dplyr,
methods, utils
dplyr, tidyr, numbers, purrr, stringr, stats, utils, methods,
Rcpp (>= 0.11.2), BH
Biobase, cluster, graphics, grDevices, lattice, methods, stats
BiocGenerics (>= 0.7.1), graphics, grDevices, stats, abind,
tiff, jpeg, png, locfit, fftwtools (>= 0.9-7), utils,
htmltools, htmlwidgets, RCurl
BiocGenerics, Rgraphviz, hash, S4Vectors, dplyr, ggplot2,
graph, magrittr, methods, pheatmap, graphics, utils, purrr,
tidyr, stats
MASS, e1071, quadprog, parallel, stats, matrixStats, stringr,
locfdr, Matrix
methods, graphics, grDevices, stats, utils
gap (>= 1.1-17), Matrix, BiocGenerics, utils, survey
ape, data.table, dynamicTreeCut, methods, R.utils, rJava,
stats, stringr, utils
tcltk, graphics, grDevices, stats, utils
openxlsx, tibble, dplyr, data.table, ggplot2, ggthemes,
forcats, RColorBrewer, RCy3, utils, stats
data.table, fdrtool, grDevices, graphics, Rcpp, stats, utils
ggplot2, flowCore, plyr, changepoint, knitr, reshape2,
RColorBrewer, scales, methods, graphics, stats, utils,
rmarkdown
methods, flowCore, EBImage, vegan, hexbin, ggplot2, grid
BiocGenerics, methods, Biobase, graph, flowCore, parallel
Biobase, BiocGenerics (>= 0.29.2), grDevices, graphics,
methods, stats, utils, stats4, Rcpp, matrixStats, cytolib (>=
2.13.1), S4Vectors
flowDensity (>= 1.13.1), Cairo, e1071, grDevices, graphics,
stats,methods
flowCore, graphics, flowViz (>= 1.42), car, polyclip, gplots,
methods, stats, grDevices
Biobase, BiocGenerics (>= 0.1.6), graphics, grDevices,
methods, stats, stats4
effsize, furrr, future, purrr, ggiraph, ggrepel, ggplot2,
igraph, Matrix, matrixStats, stats, utils, visNetwork,
htmlwidgets, grDevices, methods, stringr, stringi, Rdpack,
data.table (>= 1.9.5), gridExtra,
Biobase, graphics, grDevices, methods, rrcov, stats, feature,
flowCore
rrcov,flowCore, graphics, methods, stats, utils
flowCore, car, caTools, knitr, rmarkdown, minpack.lm, shiny,
methods, graphics, stats, utils
stats, utils, colorRamps, ConsensusClusterPlus, dplyr,
flowCore, ggforce, ggnewscale, ggplot2, ggpubr, grDevices,
magrittr, methods, rlang, Rtsne, tidyr, BiocGenerics, XML
utils, dplyr (>= 1.0.0), tibble, magrittr, plyr, rlang
flowCore, methods, flowViz, stats, flowClust
stats4, Biobase, flowCore, graphics, grDevices, grid,
KernSmooth, lattice, latticeExtra, MASS, methods, RColorBrewer,
stats, utils, hexbin,IDPmisc
splancs, mvoutlier, methods, stats, diptest, flowCore, flowFP
AnVILBase, BiocBaseUtils, dplyr, httr, rlang, tibble, tidyr,
utils
tcltk, ggplot2, methods, stats, grDevices, graphics, utils
dplyr, grDevices, ggplot2, magrittr, mixtools, scales,
pbmcapply, parallel, stats, utils
graphics, grDevices, methods, stats, tcltk, utils, xtable
utils, methods, stats, Biobase, BiocGenerics
tensorflow, word2vec, DeepPINCS, ttgsea, CatEncoders,
reticulate, stats
xml2, rvest, stringr, RCurl, doParallel, foreach, plyr
ape, aplot, dplyr, ggplot2 (>= 4.0.0), grid, magrittr,
methods, purrr, rlang, ggfun (>= 0.1.7), yulab.utils (>=
0.1.6), tidyr, tidytree (>= 0.4.5), treeio (>= 1.8.0), utils,
scales, stats, cli, ggiraph (>= 0.9.1)
ggplot2 (>= 4.0.0), utils, rlang, ggnewscale, stats, ggtree,
tidytree (>= 0.3.9), cli, magrittr
interp, ape, dplyr, GGally, ggplot2, grid, ggtree, phytools,
rlang, tibble, tidyr, tidyselect, stats
DBI, RMariaDB, RSQLite, numDeriv, RColorBrewer, parallel,
stats, methods, graphics, grDevices, xtable, tools, brew,
stringr, RJSONIO, ggplot2, ggrepel, tidyr, utils, RCurl, XML
parallel, ggplot2, ggrepel, plyr, vegan, DT, shiny, shinyBS,
stats, utils, grDevices
Matrix, Rcpp, stats, ggplot2, methods, cowplot, matrixStats
graphics, grDevices, reshape2, stats, utils
cluster, doParallel, foreach, matchingR, nsga2R, survival,
proxy, stats, methods,
graphics, stats, utils, methods, gdsfmt, DBI, RSQLite,
GWASExactHW, DNAcopy, survival, sandwich, lmtest, logistf,
quantsmooth, data.table
utils, httr2, jsonlite, parallel, filelock, rappdirs
Rcpp (>= 1.0.0), RcppEigen(>= 0.3.2.0), Matrix, RANN, ape,
dendextend, ggplot2, mclust, patchwork, dplyr, grDevices,
methods, stats
graphics, grDevices, stats, utils, BiocGenerics
dplyr, openxlsx, ggplot2, tibble, xml2, stats, utils,
gridExtra
httr2, dplyr, tidyr, tibble, rjsoncons, utils, stringr,
whisker, purrr, rlang
methods, grid, graph, hypergraph, Rgraphviz, stats4
methods, slam, lpsymphony, fdrtool, BiocGenerics
DT, dplyr, bslib, bsicons, ggplot2, viridis, tidyr, leaflet,
clipr, rlang
methods, stats, graphics, grid, lattice, grDevices
stringr, ontologyIndex, curl, ggplot2, readr, rvest, tidyr,
xml2, maps, rlang
stats, grDevices, utils, graphics, pbapply, matlab, png,
raster, grid, uwot, gtools, Biobase, generics, parallel,
methods, xgboost
SQUAREM, bdsmatrix, numDeriv, stats, tidyr, ggplot2
utils, dplyr, readr, tidyr, purrr, rlang, tibble, stringr, fs,
lubridate, lifecycle, ggplot2, ggrepel, stats, readxl, tools,
grDevices, forcats, glue, shiny, shinyWidgets, datamods, bslib,
vegan, data.table, DT
dplyr, magrittr, methods, quadprog, readr, readxl, stringr,
tibble, tools, utils, pracma, WriteXLS
IsoCorrectoR, readxl, tcltk2, tcltk, utils
graphics, grDevices, stats, survival, utils
akima, ggplot2, irr, jsonlite, parallel, plot3D, plyr, RCurl,
ROCR, testthat
ggplot2, Matrix, doSNOW, cluster, parallel, foreach,
doParallel, matrixcalc, Rtsne, corpcor, umap
readxl, graphics, tools, utils, grDevices, ggplot2, ggrepel,
methods, stats, latticeExtra, lattice, rmarkdown, png, grid,
gridExtra, prettydoc, rvest, xml2
Biobase, graphics, grDevices, venn, mclust, stats, MASS
dplyr (>= 1.0), methods, mgcv, caret, S4Vectors, stats, utils,
rlang, graphics, matrixStats, tidyr
flowCore (>= 1.4),tidyr (>=
0.7),fastcluster,ggplot2,metafor,cluster,FlowSOM, grDevices,
graphics, stats, utils
methods, stats, Rcpp, MCL, RSpectra, apcluster, bigmemory,
foreach, ggplot2, parallel, parallelDist, reshape2, plyr,
biganalytics, stringr, Hmisc, utils
utils, methods, graphics, KernSmooth, stats
purrr, MASS, pscl, assertthat, caTools, dplyr, pheatmap,
reshape2, corrplot, grDevices, graphics, stats, utils,
data.table, R.utils, viridis
assertthat, caret, deldir, digest, distances, dplyr (>=
1.1.0), filelock, furrr (>= 0.2.0), ggplot2, methods, purrr,
ranger, readr (>= 2.0.0), ridge, rlang, rlist, R.utils, stats,
stringr, tibble, tidyr, tidyselect (>= 1.2.0), utils, withr
Rcpp, BH, xml2, methods, igraph, fabia, RcppParallel, biclust,
isa2, QUBIC, akmbiclust, RColorBrewer
plyr, dplyr, dbplyr, magrittr, foreach, parallel, doSNOW,
stringr, mzR, reshape2, fastcluster, ggplot2, DBI, RSQLite
data.table, log4r, methods, checkmate, utils, stringi, Rcpp,
parallel
minpack.lm, ggplot2, utils, stats, grDevices
graphics, grDevices, stats, methods, fields
mclust, ctc, survival, cluster, dendextend, amap, graphics,
grDevices
XML, plyr, parallel, doParallel, foreach, iterators,
ProtGenerics
Biobase, BiocGenerics (>= 0.13.6), ProtGenerics (>= 1.17.3),
ncdf4
stats, Matrix, dplyr, doParallel, foreach, parallel,
sparseMVN, ggplot2, gridExtra, pROC
ggplot2, graph, igraph, parallel, plyr, qvalue, RColorBrewer
multtest (>= 1.7.3), graphics, grDevices, stats, interp
dplyr, ggplot2, forcats, tibble, gridExtra, magrittr, readr,
tidyselect, grid, stats, stringr
Rcpp (>= 0.12.4), parallel, data.table, graph, Rgraphviz,
gtools, igraph, methods, RColorBrewer, grDevices, car, dplyr,
smatr, ggplot2, ggrepel, stringr
MASS, jsonlite, Hmisc, methods, knitr, AICcmodavg, car, rlist,
summarytools, graphics, stats, utils
transport, parallel, Rfast, robustbase, dbscan, randomForest,
foreach, graphics, doParallel, stats, flowMeans, rgl, ellipse
matrixStats, igraph, ggplot2, grid, reshape, plyr, RUnit,
hexbin
graphics, grDevices, MASS, methods, pvclust, stats, utils,
RedeR
lars, methods, parallel, stats, survival, utils
graphics, stats, methods, ggplot2, utils, grDevices, stringr,
plyr, dplyr, tidyr, quadprog, Matrix, S4Vectors, shiny, readxl,
DT, igraph, shinycssloaders, shinyhelper, shinyjs, shinyjqui,
shinyWidgets, htmlwidgets, plotly, colourpicker, shinytoastr
Matrix, ptw, ggplot2, gridExtra, matrixStats, reshape2,
methods, graphics, stats
igraph, Matrix, foreach, doParallel, dplyr, stats, utils,
parallel
ape, phangorn, tidyr, ggplot2, ggtree, methods
plyr, stats, graphics, matrixStats, methods
utils, Biobase (>= 2.5.5), MASS, methods
ggplot2, gridExtra, mclust, diptest, rlist, shiny, DT,
LaplacesDemon, purrr, shinyjs, readr, grDevices, stats, utils
stats, utils, grDevices, mvtnorm, sn, dplyr, flowPeaks,
ggplot2, tidyverse, cowplot, mlrMBO, DiceKriging, smoof,
ParamHelpers, lhs, rgenoud, BiocManager
cubature, doParallel, evmix, foreach, magrittr, methods,
parallel, purrr, stats, truncdist, vegan, VGAM
graphics, grDevices, Icens, stats, utils
Biobase, methods, knitr, tools, xtable, pander, S4Vectors
methods, graphics, utils, stats, Rdpack (>= 0.7)
EBImage, methods, rJava (>= 0.9-6), S4Vectors, stats
stringr, gplots, ggplot2, methods, stats, utils, shiny
httr, methods, RJSONIO, XML, utils, BiocGenerics, stats,
graph, fs, uuid, stringi, glue, RCurl, base64url, base64enc,
IRkernel, IRdisplay, RColorBrewer, gplots
methods, httpuv (>= 1.5.0), BiocGenerics, base64enc, utils
graphics, grDevices, methods, stats, MASS, rgl
methods, utils, stats, lsr, FactoMineR, stringr, circlize,
corrplot, ggplot2, ggridges, reshape2, pryr, S4Vectors,
imputeLCMD, scatterplot3d, glmnet, gridExtra, grid, Hmisc,
gplots, gtools, scales, lme4, grDevices, graphics, ggrepel,
mice
dplyr, ggplot2, hash, methods, rhdf5, rlang, stats, S4Vectors,
tidyr, tools, yaml
plyr, dplyr, DBI, data.table, reshape2, methods, sqldf, tools,
utils, RSQLite
glmnet, pROC, ggplot2, graphics, stats, Biobase, methods,
utils
Biobase (>= 2.5.5), e1071, graphics, grDevices, kernlab,
methods, pamr, stats, utils
XML, RCurl, assertthat, stringi, rvest, data.table, xml2,
dplyr, purrr, survival, survminer, ggplot2, ggthemes, viridis,
knitr, scales, rmarkdown, htmltools
Biobase, methods, ggplot2, pROC, fdrtool, splines, utils,
tibble
GENLIB, gRain, snpStats, kinship2, methods, stats, utils,
R.utils
httr, utils, XML, rjson, data.table, RCurl, dplyr, tidyr,
readr, stringr, purrr, lubridate
grid, ggplot2, plyr, spatstat.geom, stats, grDevices
data.table, Rcpp, magrittr, plyr, stringr, utils, stats,
methods, ggplot2, pheatmap, RColorBrewer, rhdf5, readr,
parallel, grDevices
tibble, dplyr, FNN, flowCore, Rtsne, ggplot2, magrittr, utils,
stats, readr
ggplot2, grid, igraph, utils, yulab.utils
httr, jsonlite, yaml, objectProperties, stringr, S4Vectors,
docopt, curl, uuid, data.table
stats4, grDevices, graphics, stats, scrime (>= 1.2.5)
mzR, ggplot2, grid, reshape2, grDevices, stats, utils
parallel, Matrix, stats, methods, Rcpp, pracma, RcppAnnoy,
RSpectra
Rcpp (>= 0.11.2), entropy, scatterplot3d, MASS, TSP, ggplot2,
reshape2, fields, proxy, parallel, Rtsne, fastICA, cluster,
statmod
RColorBrewer, Rcpp, ape, aplot, ggplot2, ggrepel, ggtree,
graphics, grDevices, gridExtra, methods, parallel, seqinr,
stats, tidytree, utils
magrittr (>= 1.5), dplyr, stats, tidyr, utils, Rcpp (>= 1.0.0)
basilisk, reticulate, irlba, stats, assertthat
Rcpp, Matrix, matrixStats (>= 0.60.0), methods
methods, glmnet, huge, stats, graphics, utils
Biobase (>= 2.5.5), graphics, grDevices, gtools, methods,
RColorBrewer, stats, utils
png, sqldf, plyr, igraph, httr, methods, RColorBrewer, gplots,
hash, plotrix
data.table, dplyr, tidyr, ggplot2, magrittr, qvalue (>= 1.99),
digest, Biobase
dplyr, nloptr, magrittr, methods, tibble, tidyselect,
BEDASSLE, scales, visNetwork, randomcoloR
ipred, SuppDists, KernSmooth, survivalROC, bootstrap, grid,
rmeta, stats, graphics
data.table, ggplot2, grDevices, magrittr, methods, patchwork,
RankProd, RColorBrewer, stats, utils
DT, assertthat, bsplus, crayon, dplyr, ggplot2, htmltools,
glue, magrittr, methods, plotly, rlang, rstudioapi, shinyAce,
shinyFiles, shinyWidgets, shinydashboard, shinydashboardPlus
(>= 2.0.0), shinyjqui, shinyjs, shinytoastr, stringr, stats,
styler, tibble, utils, vroom (>= 1.3.1), yaml, R6, RSQLite,
openssl
ape (>= 5.0), phangorn (>= 2.12), rlang, utils, methods, dplyr
ggplot2, ggpubr, methods, miniUI, mzID, mzR, shiny, stats
graphics, grDevices, methods, ncdf4, stats, utils, assertthat
Biobase, dplyr, flowCore, ggplot2, methods, purrr, rlang,
stats, stringr, tibble, tidyr
ape, dplyr, jsonlite, magrittr, methods, rlang, stats, tibble,
tidytree (>= 0.4.5), utils, yulab.utils (>= 0.1.6)
graphics, utils, stats, dplyr, ggplot2, patchwork, stringr,
tidyr, roll
grDevices, graphics, methods, stats, survival, utils,
siggenes, LogicReg (>= 1.6.1), data.table
shinyjs, shinyFiles, plyr, data.table, DT, stringr,
stringdist, plot3D, gridExtra, RColorBrewer, plotly, dplyr,
config (>= 0.3.1), golem (>= 0.3.1), methods, grDevices,
graphics, stats, utils, vegan
bnlearn, Rgraphviz, gtools, parallel, foreach, doParallel,
iterators, RColorBrewer, circlize, igraph, grid, gridExtra,
xtable, gtable, scales, R.matlab, grDevices, graphics, stats,
utils, methods
tm, text2vec, tokenizers, textstem, stopwords, data.table,
purrr, DiagrammeR, stats
Biobase, graphics, grDevices, splines, stats
class, ggplot2, hexbin, methods, scales, shiny, stats, utils,
RColorBrewer, S4Vectors
methods, stats, httr, jsonlite, S4Vectors
Rcpp, Matrix, igraph, mgcv, RSpectra, grDevices, graphics,
stats
dplyr, DT, methods, ggplot2, grDevices, magrittr, patchwork,
plotly, purrr, rlang, shiny, stats, tibble, tidyr, htmlwidgets,
utils
utils, data.tree, ape, parallel, Rfast, stats
mixtools, stats, parallel, e1071, KernSmooth
mclust, plyr, alluvial, ggplot2, igraph, gridExtra, tools,
grDevices, graphics, utils, STRINGdb
cpp11, BH(>= 1.81.0.0), cytolib, RProtoBufLib
R.oo (>= 1.22.0), R.utils (>= 2.7.0), AffymetrixDataTestFiles
BiocStyle, rmarkdown, knitr, testthat, digest, Matrix,
alabaster.matrix
mia (>= 1.6.0), DT, S4Vectors, SingleCellExperiment,
SummarizedExperiment, TreeSummarizedExperiment, dplyr, knitr,
magrittr, microbiome, phyloseq, rmarkdown, testthat, tidyr,
tidyverse
ExperimentHub, SNFtool, knitr, rmarkdown, testthat
BiocFileCache, BiocStyle, knitr, processx, rhdf5 (>= 2.52.1),
rmarkdown, S4Vectors, Seurat, SeuratObject,
SingleCellExperiment, spelling, SummarizedExperiment, testthat
(>= 3.0.0), vctrs, withr, yaml
knitr, rmarkdown, testthat, withr, readr, BiocStyle,
devtools, AnVILAz, AnVILGCP, lifecycle
BiocStyle, dplyr, knitr, readr, rmarkdown, tinytest
AnVIL, AnVILAz, AnVILGCP, BiocStyle, knitr, rmarkdown,
testthat (>= 3.0.0), tinytest
AnVIL, BiocStyle, knitr, rmarkdown, testthat, withr
knitr, BiocStyle, GCPtools, testthat (>= 3.0.0)
AWAggregatorData, BiocStyle, ExperimentHub, knitr, rmarkdown,
testthat (>= 3.0.0)
knitr, rmarkdown, methods, testthat, BiocStyle
knitr, rmarkdown, BiocStyle, testthat, callr
BiocStyle, knitr, rmarkdown, formatR, rrBLUP, testthat (>=
3.0.0)
tools, tkWidgets, ALL, RUnit, golubEsets, BiocStyle, knitr,
limma
limma, DESeq2, airway, ggplot2, plyr, GenomicRanges,
testthat, magrittr, edgeR, qvalue, knitr, data.table, MSnbase,
rmarkdown, SummarizedExperiment
BiocStyle, knitr, testthat (>= 3.0.0), rmarkdown
knitr, testthat, rjsoncons, igraph, BiocStyle
Biobase, S4Vectors, IRanges, S4Arrays, SparseArray,
DelayedArray, HDF5Array, GenomicRanges, pwalign, Rsamtools,
AnnotationDbi, affy, affyPLM, DESeq2, flowClust, MSnbase,
annotate, MultiAssayExperiment, RUnit
BiocParallel, testthat, BiocStyle, knitr, rmarkdown
BiocStyle, here, knitr, rmarkdown, testthat (>= 3.0.0)
BiocStyle, covr, devtools, knitr, pkgdown, RefManageR,
rmarkdown, sessioninfo, testthat, utils
BiocGenerics, BiocPkgTools, knitr, commonmark, BiocStyle
BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr,
rmarkdown, xml2
RefManageR, BiocStyle, covr, knitr, testthat (>= 3.0.0),
sessioninfo
knitr, BiocStyle, rmarkdown, testthat (>= 3.0.0)
knitr, BiocStyle, BiocGenerics, testthat, RUnit
CellMapperData, Biobase, HumanAffyData, ALL, BiocStyle,
ExperimentHub
knitr, rmarkdown, dplyr, ggplot2, RUnit, BiocGenerics,
BiocManager, kableExtra, rgl
data.table, dplyr, tidyr, readr, knitr, RUnit, BiocGenerics,
zellkonverter, SingleCellExperiment, HDF5Array, tidyr,
BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), mockery
ChemmineR, BiocStyle, knitr, knitrBootstrap, BiocManager,
rmarkdown,RUnit,codetools
argparser, BiocStyle, knitr, rmarkdown, PCHiCdata, testthat,
GenomeInfoDb, Rsamtools, GenomicInteractions, GenomicRanges,
IRanges, AnnotationHub
yeastExpData, knitr, rmarkdown, devtools, testthat, biomaRt
knitr, rmarkdown, testthat, BiocStyle, ggplot2, plsgenomics,
covr
BiocStyle, knitr, testthat, ggplot2, ggrepel, patchwork
MASS, class, nnet, glmnet, e1071, randomForest, plsgenomics,
gbm, mgcv, corpcor, limma, st, mvtnorm
minet, Rgraphviz, RUnit, BiocGenerics, igraph
flowWorkspace (>= 3.33.1), flowCore, ncdfFlow, shiny,
testthat, devtools, flowWorkspaceData, ggplot2, progress
BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
BiocStyle, knitr, rmarkdown, tidyr, ggplot2, gridExtra,
magick, Cairo, limma
magrittr, dplyr, purrr, knitr, stringr, rmarkdown, tidyr
EBcoexpress, testthat, EBarrays, GeneNet, mclust, minqa,
SummarizedExperiment, Biobase, knitr, rmarkdown, BiocStyle,
edgeR
testthat (>= 3.0.0), knitr, Seurat, SeuratObject, tidyverse,
rmarkdown, BiocStyle
Biobase, BiocManager, BiocSet, edgeR, DESeq2, GEOquery, GSA,
knitr, limma, readxl, rmarkdown, S4Vectors,
SummarizedExperiment, testthat, covr
BiocStyle, cowplot, DropletUtils, knitr, reshape2, rmarkdown,
testthat (>= 3.0.0)
knitr, rmarkdown, BiocStyle, ggplot2, uwot, testthat
BiocStyle, GenomeInfoDb, GenomicRanges, IRanges, knitr,
rmarkdown, sessioninfo, testthat (>= 3.0.0), tibble
testthat, knitr, rmarkdown, ggplot2, ggsci, igraphdata,
BiocStyle, reshape2, utils
knitr, rmarkdown, BiocGenerics, RUnit, tinytest, BiocStyle,
Biostrings
distill, BiocStyle, knitr, readxl, edgeR, limma, EDASeq,
statmod
BiocStyle, digest, knitr, rmarkdown, shiny
knitr, tximportData, testthat (>= 3.0.0)
knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle
roxygen2, GEOquery, BiocStyle, knitr, rmarkdown, Biobase,
testthat
BiocFileCache, BiocStyle, ggtree, graphics, knitr, memuse,
rmarkdown, spelling, testthat (>= 3.0.0)
biomaRt, tidyr, testthat, knitr, rmarkdown, devtools, covr
testthat, flowWorkspace, flowWorkspaceData, knitr, rmarkdown,
openCyto, flowStats(>= 4.7.1)
Rgraphviz, flowViz, flowStats (>= 3.43.4), testthat,
flowWorkspace, flowWorkspaceData, openCyto, knitr, ggcyto,
gridExtra
RUnit, BiocGenerics, knitr, markdown, rmarkdown
BiocStyle, dplyr, knitr, rmarkdown, testthat (>= 2.1.0)
BiocStyle, testthat, CytoML, flowWorkspace, ggrepel,
scattermore, pheatmap, ggpointdensity
knitr, rmarkdown, flowViz, ggplot2, BiocGenerics, stats,
flowClust, openCyto, flowStats, ggcyto
colorspace, flowStats, knitr, rmarkdown, markdown, testthat
knitr, ggplot2, testthat, BEDMatrix, genio
parallel, digest, Matrix, crayon, RUnit, knitr, markdown,
rmarkdown, BiocGenerics
knitr, RUnit, testthat, BiocGenerics, rmarkdown, markdown
apcluster, GEOquery, knitr, rmarkdown, BiocStyle
knitr, rmarkdown, foreach, doRNG, doParallel, Biobase,
SummarizedExperiment, testthat, methods, BiocStyle
VAExprs, stringdist, knitr, testthat, rmarkdown
BiocCheck, roxygen2, knitr, rmarkdown, testthat
knitr, rmarkdown, dplyr, dbplyr, tm, wordcloud
emojifont, ggimage, ggplotify, shadowtext, grDevices, knitr,
prettydoc, rmarkdown, testthat, tibble, glue, Biostrings
aplot, cluster, knitr, MASS, mdendro, prettydoc, pvclust,
rmarkdown, testthat (>= 3.0.0), treeio, yulab.utils
treeio, ggstar, patchwork, knitr, rmarkdown, prettydoc,
markdown, testthat (>= 3.0.0), pillar
knitr, prettydoc, rmarkdown, BiocStyle, testthat (>= 3.0.0)
roxygen2, knitr, rmarkdown, testthat, BiocStyle
SparseM (>= 0.36), XML, RBGL, RUnit, cluster, BiocStyle,
knitr
knitr, rmarkdown, ggplot2, BiocStyle, genefu, survcomp,
Biobase, survminer, breastCancerTRANSBIG, breastCancerUPP,
iC10TrainingData, pamr, testthat
ncdf4, GWASdata, BiocGenerics, RUnit, Biostrings,
GenomicRanges, IRanges, SNPRelate, snpStats, S4Vectors,
VariantAnnotation, parallel, BiocStyle, knitr
knitr, rmarkdown, testthat, BiocStyle, digest, jsonvalidate,
DBI, RSQLite, S4Vectors, methods
BiocStyle, rmarkdown, knitr, testthat (>= 3.0.0)
parallel, ggplot2, reshape2, gdsfmt, SNPRelate, SeqArray,
knitr, markdown, rmarkdown, Rsamtools
testthat (>= 3.0.0), knitr, ggplot2, rmarkdown, BiocStyle,
pryr
SingleCellExperiment, SummarizedExperiment, Seurat,
SeuratObject, ggplot2, progress, testthat, splatter, scater,
devtools, knitr, rmarkdown, BiocStyle, ExperimentHub
ggplot2, dplyr, gridExtra, scales, DESeq2, airway, testthat,
Matrix, BiocStyle, knitr, rmarkdown, devtools
RUnit, BiocGenerics, IlluminaDataTestFiles (>= 1.0.2),
BiocStyle
BiocManager, BiocStyle, knitr, curl, glue, rmarkdown,
sessioninfo, testthat, tibble, GenomicDataCommons
BiocGenerics, rmarkdown, BiocStyle, knitr, testthat, DT
knitr, rmarkdown, keras, tensorflow, glmnetUtils, e1071
knitr, BiocStyle, rmarkdown, testthat (>= 3.0.0),
SummarizedExperiment
testthat, covr, knitr, BiocStyle, sessioninfo, rmarkdown,
roxygen2, withr, extraDistr, ggalluvial, scales, gridExtra,
R.utils, RefManageR, flexdashboard, circlize, plotly, gtools,
eulerr, openxlsx, jsonlite, pheatmap, BiocParallel, progressr,
future, doFuture, foreach, psych, Rcapture
IsoCorrectoRGUI, knitr, rmarkdown, testthat, BiocStyle
BiocManager, BiocStyle (>= 2.26), httptest, knitr, lattice,
msdata, OrgMassSpecR, protViz, S4Vectors, Spectra, testthat,
mzR
biomaRt (>= 2.34.1), circlize (>= 0.4.11), STRINGdb (>=
2.2.0), httr (>= 1.2.1), IRanges (>= 2.8.2), S4Vectors (>=
0.12.2), knitr, testthat, readr, rmarkdown
signal, waveslim, BiocStyle, knitr, rmarkdown, RUnit, bench
Matrix, sparseMatrixStats, SparseArray, DelayedArray,
DelayedMatrixStats, SummarizedExperiment, testthat (>= 2.1.0)
testthat, knitr, rmarkdown, fgsea, BiocManager
knitr (>= 1.5), antiProfilesData (>= 0.99.2), Biobase (>=
2.22.0), BiocStyle
BiocStyle, cvms, data.table, dplyr, ggplot2, gridExtra,
knitr, R.utils, rmarkdown, sabre, spelling, testthat (>= 3.0.0)
BiocGenerics, RUnit, knitr, rtracklayer, utils, rmarkdown
BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics, shiny
BiocStyle, knitr, rmarkdown, R.cache, SPONGE
BiocStyle, covr, earth, future, igraph (>= 1.2.7), iml,
kernlab, knitr, MASS, rmarkdown, RSNNS, testthat (>= 3.0.0),
xgboost
testthat, knitr, rmarkdown, dplyr, shinycssloaders, shiny,
shinyFiles, shinydashboard, shinyjs
knitr, rmarkdown, BiocGenerics, runibic, BiocStyle, testthat
(>= 3.0.0)
testthat, knitr, BiocStyle, rmarkdown, roxygen2, imputeLCMD,
impute, norm, pcaMethods, vsn, Matrix, preprocessCore,
missForest
MSnbase, testthat, xcms, BiocStyle, knitr, rmarkdown,
msPurityData, CAMERA, RPostgres, RMySQL
BiocStyle, knitr, rmarkdown, covr, tinytest, dplyr
knitr, rmarkdown, gplots, RUnit, BiocGenerics,
preprocessCore, Biobase, GEOquery
msdata (>= 0.15.1), RUnit, mzID, BiocStyle (>= 2.5.19),
knitr, XML, rmarkdown
rBiopaxParser (>= 2.1), RCurl, graph, knitr, rmarkdown,
BiocStyle
knitr, rmarkdown, BiocStyle, magick, testthat
RcppProgress, knitr, rmarkdown, roxygen2, devtools, usethis,
desc, testthat (>= 3.0.0)
BiocStyle, knitr, Oncotree, testthat (>= 1.0.0), rmarkdown,
bookdown, pander
airway, BiocStyle, cowplot, DESeq2, devtools, ggplot2,
gridExtra, knitr, Matrix, rmarkdown, scales, testthat
RUnit, sandwich, MASS, knitr, GenomeInfoDb, GenomicRanges,
gwascat, BiocStyle, rmarkdown
knitr, rmarkdown, RUnit, BiocGenerics, BiocStyle
airway, circlize, grDevices, knitr, RCurl, reshape2,
rmarkdown, SummarizedExperiment, survminer, testthat, tidyverse
diffviewer, gridExtra, testthat (>= 3.0.0), vdiffr,
rmarkdown, BiocStyle, knitr, withr, qpdf, shinytest2, devtools,
R.devices, usethis, rlang, magick, cowplot
knitr, markdown, rmarkdown, BiocStyle, PepsNMRData
testthat, knitr, ecodist, rmarkdown, BiocStyle, phyloseq,
SummarizedExperiment, TreeSummarizedExperiment, glmnet, dplyr,
mia
ExperimentHub, mixOmics, ggplot2, testthat, tidyr, scales,
minfi, EpiDISH, knitr, rmarkdown
knitr, rmarkdown, tidyverse, ggrepel, magrittr, qpdf,
BiocStyle, biocViews, testthat (>= 3.0.0)
knitr, htmltools, BiocStyle, rmarkdown, testthat
testthat (>= 3.0.0), knitr, rmarkdown, ddPCRclust
BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics
affy, MSnbase, ggplot2, lattice, mzR, BiocStyle, rmarkdown,
markdown
QUBICdata, qgraph, fields, knitr, rmarkdown
knitr, BiocParallel, lme4, nlme, rmarkdown, BiocStyle,
testthat (>= 2.1.0), limma, sva
markdown, ggplot2, BiocStyle, rmarkdown, knitr, testthat (>=
3.0.0)
BiocStyle (>= 2.5), ExperimentHub, knitr, protViz (>= 0.7),
rmarkdown, tartare (>= 1.5), testthat
Rgraphviz, XML, RUnit, BiocGenerics, BiocStyle, knitr
Rgraphviz, RCurl, graph, RUnit, BiocGenerics, RBGL, igraph
testthat, parallel, BiocStyle, knitr, rmarkdown
knitr, RColorBrewer, sqldf, BiocGenerics, testthat,
BiocStyle, jsonlite, heatmaply, glmnet, foreach, doSNOW,
parallel, rmarkdown
knitr, BiocStyle, knitcitations, sessioninfo, rmarkdown,
testthat, covr
BiocStyle, testthat, knitr, rmarkdown, base64enc, graph
BiocStyle, knitr, rmarkdown, igraph, grDevices
knitr, rmarkdown, markdown, BiocStyle, TreeAndLeaf
BiocStyle, knitr, rmarkdown, testthat, DescTools, ggplot2,
corrplot, cowplot, grid, colorspace, png, reshape2, pals, RCurl
mclust, flexmix, testthat, BiocStyle, knitr, formatR,
rmarkdown
testthat (>= 2.1.0), BiocStyle, knitr, rmarkdown, kableExtra,
BiocManager, stringr, stringi, ggplot2, tibble, lipidr
RUnit, BiocStyle, BiocGenerics, xtable, sna
bit64, BiocStyle, knitr, rmarkdown, testthat, bench, dplyr,
ggplot2, mockery, BiocParallel
BiocStyle, knitr, rmarkdown, tinytest, rhdf5 (>= 2.47.7)
BiocStyle, knitr, rmarkdown, tinytest, mockery
BiocStyle, knitr, rmarkdown, testthat, devtools
readxl, knitr, rmarkdown, reshape2, pander, testthat
devtools, testthat, pander, Biobase, GenomicRanges, IRanges,
S4Vectors, RTCGA.rnaseq, RTCGA.clinical, RTCGA.mutations,
RTCGA.RPPA, RTCGA.mRNA, RTCGA.miRNASeq, RTCGA.methylation,
RTCGA.CNV, magrittr, tidyr
knitr, BiocStyle, TPP, testthat, rmarkdown
knitr, testthat, rmarkdown, BiocStyle, VariantAnnotation
IRanges, GenomicRanges, SummarizedExperiment, Matrix,
DelayedArray, ShortRead, graph, data.table, RUnit, BiocStyle,
knitr
testthat, knitr, rmarkdown, BiocStyle, SingleCellExperiment,
SummarizedExperiment, scRNAseq, cowplot
testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown, VGAM,
R.utils
rmarkdown, knitr, testthat (>= 3.0.0), BiocStyle
emojifont, knitr, rmarkdown, prettydoc, tibble
testthat, parallel, knitr, rmarkdown, BiocStyle
testthat, knitr, rmarkdown, ggthemes, gridExtra, xlsx
RUnit, BiocGenerics, knitr, Rsamtools, GenomicAlignments,
rtracklayer, rmarkdown, BiocStyle
BiocGenerics, BiocStyle, testthat, knitr, igraph
BiocStyle, knitr, biomaRt, stringr, monocle
BiocStyle, devtools, knitr, magick, rmarkdown, testthat
knitr, rmarkdown, BiocStyle, ggplot2, testthat (>= 3.0.0)
parallel, Matrix, RUnit, knitr, markdown, rmarkdown, MASS,
BiocGenerics
testthat (>= 2.1.0), knitr, bench, rmarkdown, BiocStyle
testthat, lme4, BiocStyle, knitr, rmarkdown, roxygen2 (>=
5.0.0)
BiocGenerics, BiocStyle (>= 2.2), knitr (>= 1.15), rmarkdown,
RUnit (>= 0.4)
BiocStyle, knitr, rmarkdown, assertthat, HD2013SGI, dplyr,
ggplot2
limma, edgeR, DESeq2, DEXSeq (>= 1.9.7), testthat, knitr
rmarkdown, markdown, knitr, testthat (>= 3.0.0)
Hmisc, clinfun, xtable, Biobase, BiocManager
dplyr, ggplot2, BiocStyle, knitr, qvalue, reshape2,
rmarkdown, testthat
knitr, rmarkdown, testthat (>= 3.0.0), ggplot2, tidyverse,
BiocStyle
testthat, BiocStyle, knitr, rmarkdown, systemPipeR (>=
2.12.0), systemPipeRdata (>= 2.10.0), rhandsontable, zip,
callr, pushbar, fs, readr, R.utils, DESeq2,
SummarizedExperiment, glmpca, pheatmap, grid, ape, Rtsne,
UpSetR, tidyr, esquisse (>= 1.1.0), cicerone
tinytest, BiocStyle, ggimage, knitr, rmarkdown
BiocStyle, knitr, msdata, sessioninfo, rmarkdown, gridExtra,
testthat (>= 3.0.0), covr
BiocStyle, bugsigdbr, fgsea, knitr, rmarkdown, testthat
BiocStyle, HDCytoData, knitr, RefManageR, rmarkdown,
sessioninfo, testthat (>= 3.0.0)
rmarkdown, knitr, BiocStyle, biomaRt, RCy3, testthat (>=
3.0.0)
knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, stringr,
geneplast, ggtree, ggplot2, dplyr, dendextend, RColorBrewer
Biostrings, cli, ggplot2, ggtree, igraph, knitr, rmarkdown,
phangorn, prettydoc, purrr, testthat, tidyr, vroom, xml2, yaml
BiocStyle, knitr, rmarkdown, kableExtra, testthat (>= 3.0.0)
haplo.stats, mcbiopi, splines, logicFS (>= 1.28.1),
KernSmooth, VariantAnnotation
BiocGenerics, shinycssloaders, tidyverse, BiocManager,
Biostrings, xtable, rlist, motifStack, knitr, rmarkdown,
testthat (>= 3.0.0), fs, BiocStyle, RefManageR, biocthis, pryr
BiocGenerics, BiocStyle, testthat, knitr, rWikiPathways,
magick
fgsea, knitr, testthat, reticulate, rmarkdown
devtools, knitr, reshape2, rmarkdown, testthat, BiocStyle
DBI, RMariaDB, GenomeInfoDb, testthat, knitr, rmarkdown,
BiocStyle
GenomicRanges, SummarizedExperiment, InteractionSet,
SingleCellExperiment, MultiAssayExperiment, BiSeq, testthat,
knitr, rmarkdown, BiocStyle
knitr, markdown, RColorBrewer, rmarkdown, rstudioapi,
testthat (>= 3.0.0)
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