# Generated by roxygen2: do not edit by hand

export("Img<-")
export("ROIPoly<-")
export("annotGeometries<-")
export("annotGeometry<-")
export("annotGeometryNames<-")
export("annotGraph<-")
export("annotGraphNames<-")
export("annotGraphs<-")
export("cellSeg<-")
export("centroids<-")
export("colData<-")
export("colGeometries<-")
export("colGeometry<-")
export("colGeometryNames<-")
export("colGraph<-")
export("colGraphNames<-")
export("colGraphs<-")
export("dimGeometries<-")
export("dimGeometry<-")
export("dimGeometryNames<-")
export("localResult<-")
export("localResultNames<-")
export("localResults<-")
export("nucSeg<-")
export("rowGeometries<-")
export("rowGeometry<-")
export("rowGeometryNames<-")
export("rowGraph<-")
export("rowGraphNames<-")
export("rowGraphs<-")
export("spatialCoords<-")
export("spatialGraph<-")
export("spatialGraphNames<-")
export("spatialGraphs<-")
export("spotPoly<-")
export("tissueBoundary<-")
export("txSpots<-")
export(.check_features)
export(.check_rg)
export(.check_sample_id)
export(.check_tx_file)
export(.check_tx_file_mem)
export(.ext_)
export(.rm_empty_geometries)
export(.symbol2id)
export(.value2df)
export(.warn_symbol_duplicate)
export(BioFormatsImage)
export(ExtImage)
export(ROIPoly)
export(SFEVersion)
export(SpatRasterImage)
export(SpatialFeatureExperiment)
export(addSelectTx)
export(addTxSpots)
export(addTxTech)
export(addVisiumSpotPoly)
export(affine)
export(affineImg)
export(aggBboxes)
export(aggregateTx)
export(aggregateTxTech)
export(annotGeometries)
export(annotGeometry)
export(annotGeometryNames)
export(annotGraph)
export(annotGraphNames)
export(annotGraphs)
export(annotNPred)
export(annotOp)
export(annotPred)
export(annotSummary)
export(bbox)
export(bbox_center)
export(cellSeg)
export(centroids)
export(changeSampleIDs)
export(colData)
export(colFeatureData)
export(colGeometries)
export(colGeometry)
export(colGeometryNames)
export(colGraph)
export(colGraphNames)
export(colGraphs)
export(counts)
export(crop)
export(cropImg)
export(df2sf)
export(dimGeometries)
export(dimGeometry)
export(dimGeometryNames)
export(findDebrisCells)
export(findSpatialNeighbors)
export(findVisiumGraph)
export(findVisiumHDGraph)
export(formatTxSpots)
export(formatTxTech)
export(gdalParquetAvailable)
export(geometryFeatureData)
export(getImg)
export(getParams)
export(getPixelSize)
export(getTechTxFields)
export(getTissueBoundaryConcave)
export(getTissueBoundaryImg)
export(imageIDs)
export(imgData)
export(imgRaster)
export(imgSource)
export(isFull)
export(localResult)
export(localResultAttrs)
export(localResultFeatures)
export(localResultNames)
export(localResults)
export(logcounts)
export(mirror)
export(mirrorImg)
export(multi_listw2sparse)
export(nucSeg)
export(origin)
export(read10xVisiumSFE)
export(readCosMX)
export(readSelectTx)
export(readVisiumHD)
export(readVizgen)
export(readXenium)
export(reducedDim)
export(reducedDimFeatureData)
export(removeEmptySpace)
export(rmvImg)
export(rotate)
export(rotateImg)
export(rowData)
export(rowFeatureData)
export(rowGeometries)
export(rowGeometry)
export(rowGeometryNames)
export(rowGraph)
export(rowGraphNames)
export(rowGraphs)
export(sampleIDs)
export(scale)
export(scaleImg)
export(spatialCoords)
export(spatialCoordsNames)
export(spatialGraph)
export(spatialGraphNames)
export(spatialGraphs)
export(splitByCol)
export(splitComponent)
export(splitContiguity)
export(splitSamples)
export(spotPoly)
export(st_any_intersects)
export(st_any_pred)
export(st_n_intersects)
export(st_n_pred)
export(tissueBoundary)
export(toExtImage)
export(toSpatRasterImage)
export(toSpatialFeatureExperiment)
export(transformation)
export(translate)
export(translateImg)
export(transpose)
export(transposeImg)
export(txSpots)
export(unit)
exportClasses(BioFormatsImage)
exportClasses(ExtImage)
exportClasses(SpatRasterImage)
exportClasses(SpatialFeatureExperiment)
exportMethods("Img<-")
exportMethods("[")
exportMethods("annotGeometries<-")
exportMethods("annotGeometry<-")
exportMethods("annotGeometryNames<-")
exportMethods("dimGeometries<-")
exportMethods("dimGeometry<-")
exportMethods("dimGeometryNames<-")
exportMethods("ext<-")
exportMethods("localResult<-")
exportMethods("localResultNames<-")
exportMethods("localResults<-")
exportMethods("spatialGraph<-")
exportMethods("spatialGraphNames<-")
exportMethods("spatialGraphs<-")
exportMethods(addImg)
exportMethods(affineImg)
exportMethods(aggregate)
exportMethods(annotGeometries)
exportMethods(annotGeometry)
exportMethods(annotGeometryNames)
exportMethods(bbox)
exportMethods(cbind)
exportMethods(containsOutOfMemoryData)
exportMethods(cropImg)
exportMethods(dim)
exportMethods(dimGeometries)
exportMethods(dimGeometry)
exportMethods(dimGeometryNames)
exportMethods(ext)
exportMethods(findDebrisCells)
exportMethods(findSpatialNeighbors)
exportMethods(imgRaster)
exportMethods(imgSource)
exportMethods(isFull)
exportMethods(localResult)
exportMethods(localResultAttrs)
exportMethods(localResultFeatures)
exportMethods(localResultNames)
exportMethods(localResults)
exportMethods(mirrorImg)
exportMethods(origin)
exportMethods(rotateImg)
exportMethods(saveRDS)
exportMethods(scaleImg)
exportMethods(show)
exportMethods(spatialGraph)
exportMethods(spatialGraphNames)
exportMethods(spatialGraphs)
exportMethods(splitByCol)
exportMethods(toExtImage)
exportMethods(toSpatRasterImage)
exportMethods(toSpatialFeatureExperiment)
exportMethods(transformation)
exportMethods(translateImg)
exportMethods(transposeImg)
exportMethods(unit)
exportMethods(updateObject)
importClassesFrom(EBImage,Image)
importClassesFrom(SpatialExperiment,SpatialExperiment)
importClassesFrom(SpatialExperiment,VirtualSpatialImage)
importClassesFrom(terra,SpatRaster)
importFrom(BiocGenerics,cbind)
importFrom(BiocGenerics,containsOutOfMemoryData)
importFrom(BiocGenerics,saveRDS)
importFrom(BiocGenerics,updateObject)
importFrom(BiocNeighbors,AnnoyParam)
importFrom(BiocNeighbors,KmknnParam)
importFrom(BiocNeighbors,findKNN)
importFrom(BiocNeighbors,findNeighbors)
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpmapply)
importFrom(DropletUtils,read10xCounts)
importFrom(EBImage,Image)
importFrom(EBImage,closing)
importFrom(EBImage,fillHull)
importFrom(EBImage,makeBrush)
importFrom(EBImage,normalize)
importFrom(EBImage,otsu)
importFrom(Matrix,colSums)
importFrom(Matrix,rowSums)
importFrom(Matrix,sparseMatrix)
importFrom(S4Vectors,"mcols<-")
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,SimpleList)
importFrom(S4Vectors,combineCols)
importFrom(S4Vectors,isEmpty)
importFrom(S4Vectors,make_zero_col_DFrame)
importFrom(S4Vectors,mcols)
importFrom(S4Vectors,metadata)
importFrom(S4Vectors,setValidity2)
importFrom(S4Vectors,showAsCell)
importFrom(S4Vectors,split)
importFrom(SingleCellExperiment,"altExp<-")
importFrom(SingleCellExperiment,"int_colData<-")
importFrom(SingleCellExperiment,"int_elementMetadata<-")
importFrom(SingleCellExperiment,"int_metadata<-")
importFrom(SingleCellExperiment,"reducedDim<-")
importFrom(SingleCellExperiment,"reducedDims<-")
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,altExp)
importFrom(SingleCellExperiment,altExpNames)
importFrom(SingleCellExperiment,counts)
importFrom(SingleCellExperiment,int_colData)
importFrom(SingleCellExperiment,int_elementMetadata)
importFrom(SingleCellExperiment,int_metadata)
importFrom(SingleCellExperiment,logcounts)
importFrom(SingleCellExperiment,mainExpName)
importFrom(SingleCellExperiment,reducedDim)
importFrom(SingleCellExperiment,reducedDimNames)
importFrom(SingleCellExperiment,reducedDims)
importFrom(SpatialExperiment,"imgData<-")
importFrom(SpatialExperiment,"spatialCoords<-")
importFrom(SpatialExperiment,"spatialCoordsNames<-")
importFrom(SpatialExperiment,SpatialExperiment)
importFrom(SpatialExperiment,addImg)
importFrom(SpatialExperiment,getImg)
importFrom(SpatialExperiment,imgData)
importFrom(SpatialExperiment,imgRaster)
importFrom(SpatialExperiment,imgSource)
importFrom(SpatialExperiment,mirrorImg)
importFrom(SpatialExperiment,rmvImg)
importFrom(SpatialExperiment,rotateImg)
importFrom(SpatialExperiment,spatialCoords)
importFrom(SpatialExperiment,spatialCoordsNames)
importFrom(SpatialExperiment,toSpatialExperiment)
importFrom(SummarizedExperiment,"assay<-")
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(data.table,":=")
importFrom(data.table,as.data.table)
importFrom(data.table,fread)
importFrom(data.table,is.data.table)
importFrom(data.table,merge.data.table)
importFrom(data.table,rbindlist)
importFrom(grDevices,col2rgb)
importFrom(lifecycle,deprecate_warn)
importFrom(lifecycle,deprecated)
importFrom(lifecycle,is_present)
importFrom(methods,"slot<-")
importFrom(methods,as)
importFrom(methods,callNextMethod)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,setAs)
importFrom(methods,setClass)
importFrom(methods,setClassUnion)
importFrom(methods,setGeneric)
importFrom(methods,setMethod)
importFrom(methods,setReplaceMethod)
importFrom(methods,show)
importFrom(methods,signature)
importFrom(methods,slot)
importFrom(methods,slotNames)
importFrom(methods,validObject)
importFrom(rjson,fromJSON)
importFrom(rlang,"!!")
importFrom(rlang,"%||%")
importFrom(rlang,.data)
importFrom(rlang,check_installed)
importFrom(rlang,sym)
importFrom(sf,"st_agr<-")
importFrom(sf,"st_geometry<-")
importFrom(sf,st_agr)
importFrom(sf,st_area)
importFrom(sf,st_as_sf)
importFrom(sf,st_as_sfc)
importFrom(sf,st_bbox)
importFrom(sf,st_buffer)
importFrom(sf,st_cast)
importFrom(sf,st_centroid)
importFrom(sf,st_collection_extract)
importFrom(sf,st_coordinates)
importFrom(sf,st_covers)
importFrom(sf,st_disjoint)
importFrom(sf,st_distance)
importFrom(sf,st_drop_geometry)
importFrom(sf,st_geometry)
importFrom(sf,st_geometry_type)
importFrom(sf,st_geometrycollection)
importFrom(sf,st_intersection)
importFrom(sf,st_intersects)
importFrom(sf,st_is_empty)
importFrom(sf,st_is_valid)
importFrom(sf,st_join)
importFrom(sf,st_linestring)
importFrom(sf,st_make_grid)
importFrom(sf,st_multilinestring)
importFrom(sf,st_multipoint)
importFrom(sf,st_multipolygon)
importFrom(sf,st_nearest_feature)
importFrom(sf,st_point)
importFrom(sf,st_polygon)
importFrom(sf,st_read)
importFrom(sf,st_sf)
importFrom(sf,st_sfc)
importFrom(sf,st_simplify)
importFrom(sf,st_union)
importFrom(sf,st_z_range)
importFrom(sf,st_zm)
importFrom(sfheaders,sf_linestring)
importFrom(sfheaders,sf_multilinestring)
importFrom(sfheaders,sf_multipoint)
importFrom(sfheaders,sf_multipolygon)
importFrom(sfheaders,sf_polygon)
importFrom(spatialreg,as_dgRMatrix_listw)
importFrom(spdep,card)
importFrom(spdep,dnearneigh)
importFrom(spdep,gabrielneigh)
importFrom(spdep,graph2nb)
importFrom(spdep,knearneigh)
importFrom(spdep,knn2nb)
importFrom(spdep,mat2listw)
importFrom(spdep,n.comp.nb)
importFrom(spdep,nb2listw)
importFrom(spdep,nb2listwdist)
importFrom(spdep,poly2nb)
importFrom(spdep,relativeneigh)
importFrom(spdep,soi.graph)
importFrom(spdep,tri2nb)
importFrom(stats,aggregate)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,setNames)
importFrom(terra,"ext<-")
importFrom(terra,as.raster)
importFrom(terra,ext)
importFrom(terra,inMemory)
importFrom(terra,nlyr)
importFrom(terra,rast)
importFrom(terra,shift)
importFrom(terra,sources)
importFrom(terra,unwrap)
importFrom(terra,vect)
importFrom(terra,wrap)
importFrom(tools,file_ext)
importFrom(tools,file_path_sans_ext)
importFrom(utils,getFromNamespace)
importFrom(utils,head)
importFrom(utils,packageVersion)
importFrom(utils,read.csv)
importFrom(utils,tail)
importFrom(zeallot,"%<-%")
