scMultiome
This is the development version of scMultiome; for the stable release version, see scMultiome.
Collection of Public Single-Cell Multiome (scATAC + scRNAseq) Datasets
Bioconductor version: Development (3.22)
Single cell multiome data, containing chromatin accessibility (scATAC-seq) and gene expression (scRNA-seq) information analyzed with the ArchR package and presented as MultiAssayExperiment objects.
Author: Xiaosai Yao [cre, aut]
, Aleksander Chlebowski [aut], Aaron Lun [aut], Shiqi Xie [ctb], Tomasz Włodarczyk [aut]
Maintainer: Xiaosai Yao <xiaosai.yao at gmail.com>
citation("scMultiome")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("scMultiome")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scMultiome")| scMultiome tutorial | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellCulture, ExperimentData, ExperimentHub, ExpressionData, GEO, Homo_sapiens_Data, PackageTypeData, SequencingData, SingleCellData, Tissue |
| Version | 1.9.0 |
| License | CC BY-SA 4.0 |
| Depends | AnnotationHub, ExperimentHub(>= 2.8.1), MultiAssayExperiment, SingleCellExperiment, SummarizedExperiment |
| Imports | AzureStor, GenomicRanges, HDF5Array, S4Vectors, checkmate, methods, rhdf5, alabaster.matrix |
| System Requirements | |
| URL |
See More
| Suggests | BiocGenerics, IRanges, Matrix, knitr, rmarkdown, rstudioapi, testthat (>= 3.0.0), devtools, BiocStyle, ExperimentHubData |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | epiregulon, epiregulon.extra |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | scMultiome_1.9.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/scMultiome |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scMultiome |
| Package Short Url | https://bioconductor.org/packages/scMultiome/ |
| Package Downloads Report | Download Stats |