TransOmicsData
This is the development version of TransOmicsData; for the stable release version, see TransOmicsData.
A collection of trans-omics datasets across various biological systems
Bioconductor version: Development (3.22)
Contains a collection of trans-omics datasets generated using various sequencing technologies such as RNA-seq, Mass spectrometry and ChIP-seq. Modalities include the bulk profiling of the phosphoproteome, proteome, transcriptome and epigenome. Data reflects the timecourses of different developmental systems from the mouse or human.
Author: Carissa Chen [aut]
, Di Xiao [aut, cre]
, Pengyi Yang [aut]
Maintainer: Di Xiao <d.xiao at sydney.edu.au>
citation("TransOmicsData")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("TransOmicsData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TransOmicsData")| TransOmicsData: A collection of trans-omics datasets across various biological systems | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ChIPSeqData, ExperimentData, ExperimentHub, MassSpectrometryData, RNASeqData, SequencingData, Tissue |
| Version | 1.5.0 |
| License | GPL-3 + file LICENSE |
| Depends | |
| Imports | S4Vectors, utils |
| System Requirements | |
| URL | https://github.com/PYangLab/TransOmicsData |
| Bug Reports | https://support.bioconductor.org/t/TransOmicsData |
See More
| Suggests | BiocStyle, knitr, rmarkdown, RefManageR, sessioninfo, testthat, ExperimentHub |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TransOmicsData_1.5.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/TransOmicsData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TransOmicsData |
| Package Short Url | https://bioconductor.org/packages/TransOmicsData/ |
| Package Downloads Report | Download Stats |