CENTREprecomputed
This is the development version of CENTREprecomputed; to use it, please install the devel version of Bioconductor.
Hub package for the precomputed data of CENTRE and example data
Bioconductor version: Development (3.22)
Interface and documentation for the Experiment Hub records needed by the CENTRE Bioconductor software package. The Experiment Hub records contains the precomputed fisher combined p-values, CRUP correlations. Additionally, the records hold ChIP-seq and RNA-seq data used for the example of the software package.
Author: Sara Lopez Ruiz de Vargas [aut, cre]
Maintainer: Sara Lopez Ruiz de Vargas <lopez_s at molgen.mpg.de>
citation("CENTREprecomputed")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CENTREprecomputed")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CENTREprecomputed")| CENTRE ExperimentHub datasets | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ChIPSeqData, ChipOnChipData, ExperimentData, ExperimentHub, PackageTypeData, RNASeqData |
| Version | 0.99.3 |
| License | Artistic-2.0 |
| Depends | R (>= 4.5.0) |
| Imports | ExperimentHub, RSQLite, DBI, BiocGenerics, methods |
| System Requirements | |
| URL | https://github.com/slrvv/CENTREprecomputed |
| Bug Reports | https://github.com/slrvv/CENTREprecomputed/issues |
See More
| Suggests | knitr, rmarkdown, testthat, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CENTREprecomputed_0.99.3.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/CENTREprecomputed |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CENTREprecomputed |
| Package Short Url | https://bioconductor.org/packages/CENTREprecomputed/ |
| Package Downloads Report | Download Stats |