cliProfiler
This is the development version of cliProfiler; for the stable release version, see cliProfiler.
A package for the CLIP data visualization
Bioconductor version: Development (3.22)
An easy and fast way to visualize and profile the high-throughput IP data. This package generates the meta gene profile and other profiles. These profiles could provide valuable information for understanding the IP experiment results.
Author: You Zhou [aut, cre]
, Kathi Zarnack [aut]
Maintainer: You Zhou <youzhoulearning at gmail.com>
citation("cliProfiler")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("cliProfiler")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cliProfiler")| cliProfiler Vignettes | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ChIPSeq, Epigenetics, Genetics, Sequencing, Software, Visualization |
| Version | 1.15.0 |
| In Bioconductor since | BioC 3.14 (R-4.1) (4 years) |
| License | Artistic-2.0 |
| Depends | S4Vectors, methods, R (>= 4.1) |
| Imports | dplyr, rtracklayer, GenomicRanges, ggplot2, BSgenome, Biostrings, utils |
| System Requirements | |
| URL | https://github.com/Codezy99/cliProfiler |
| Bug Reports | https://github.com/Codezy99/cliProfiler/issues |
See More
| Suggests | knitr, rmarkdown, bookdown, testthat, BiocStyle, BSgenome.Mmusculus.UCSC.mm10 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | cliProfiler_1.15.0.tar.gz |
| Windows Binary (x86_64) | cliProfiler_1.15.0.zip |
| macOS Binary (x86_64) | cliProfiler_1.15.0.tgz |
| macOS Binary (arm64) | cliProfiler_1.15.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/cliProfiler |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cliProfiler |
| Bioc Package Browser | https://code.bioconductor.org/browse/cliProfiler/ |
| Package Short Url | https://bioconductor.org/packages/cliProfiler/ |
| Package Downloads Report | Download Stats |