AlienGenome             AlienGenome
AlienRSList_broad       AlienRSList_broad
AlienRSList_narrow      AlienRSList_narrow
chooseHclustMet         chooseHclustMet
createUniverse          createUniverse
crosswisePermTest       crosswisePermTest
cw_Alien                cw_Alien
cw_Alien_RaR            cw_Alien_RaR
cw_Alien_ReG            cw_Alien_ReG
cw_Alien_ReG_no_Square
                        cw_Alien_ReG_no_Square
cw_Alien_ReR            cw_Alien_ReR
genoMatriXeR-class      genoMatriXeR Class
getHClust               getHClust
getMatrix               Get Matrix
getMultiEvaluation      getMultiEvaluation
getParameters           getParameters
mLZ_regA_ReG            mLZ_regA_ReG
mLZ_regA_ReG_br         mLZ_regA_ReG_br
mLZ_regD_ReG            mLZ_regD_ReG
makeCrosswiseMatrix     makeCrosswiseMatrix
makeLZMatrix            Make Local Z-Score Matrix
multiLocalZScore-class
                        multiLocalZScore Class
multiLocalZscore        multiLocalZscore
plotCrosswiseDimRed     plotCrosswiseDimRed
plotCrosswiseMatrix     plotCrosswiseMatrix
plotLocalZScoreMatrix   Plot Local Z-Score Matrix
plotSingleLZ            plotSingleLZ
plotSinglePT            plotSinglePT
randomizeRegionsPerc    randomizeRegionsPerc
similarRegionSet        similar RegionSets
