annotate_pfam           Annotate proteins sequences with PFAM domains
classification_scheme   Data frame of TF family classification scheme
classify_tfs            Identify TFs and classify them in families
get_tf_counts           Get TF frequencies for each species as a
                        SummarizedExperiment object
gsu                     Protein sequences of the algae species
                        Galdieria sulphuraria
gsu_annotation          Domain annotation for the algae species
                        Galdieria sulphuraria The data set was created
                        using the funcion 'annotate_pfam()' in local
                        mode.
gsu_families            TFs families of the algae species Galdieria
                        sulphuraria The data set was created using the
                        funcion 'classify_tfs()'.
hmmer_is_installed      Check if HMMER is installed
tf_counts               TF counts per family in 4 simulated species
