Package: planttfhunter
Title: Identification and classification of plant transcription factors
Version: 1.10.0
Date: 2022-03-10
Authors@R: 
    c(
    person(given = "Fabrício",
           family = "Almeida-Silva",
           role = c("aut", "cre"),
           email = "fabricio_almeidasilva@hotmail.com",
           comment = c(ORCID = "0000-0002-5314-2964")),
    person(given = "Yves",
           family = "Van de Peer",
           role = "aut",
           email = "yves.vandepeer@psb.vib-ugent.be",
           comment = c(ORCID = "0000-0003-4327-3730"))
    )
Description: planttfhunter is used to identify plant transcription
        factors (TFs) from protein sequence data and classify them into
        families and subfamilies using the classification scheme
        implemented in PlantTFDB. TFs are identified using pre-built
        hidden Markov model profiles for DNA-binding domains. Then,
        auxiliary and forbidden domains are used with DNA-binding
        domains to classify TFs into families and subfamilies (when
        applicable). Currently, TFs can be classified in 58 different
        TF families/subfamilies.
License: GPL-3
URL: https://github.com/almeidasilvaf/planttfhunter
BugReports: https://support.bioconductor.org/t/planttfhunter
biocViews: Software, Transcription, FunctionalPrediction,
        GenomeAnnotation, FunctionalGenomics, HiddenMarkovModel,
        Sequencing, Classification
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.1
SystemRequirements: HMMER <http://hmmer.org/>
Imports: Biostrings, SummarizedExperiment, utils, methods
Suggests: BiocStyle, covr, sessioninfo, knitr, rmarkdown, testthat (>=
        3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
Depends: R (>= 4.2.0)
LazyData: false
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:20:13 UTC
RemoteUrl: https://github.com/bioc/planttfhunter
RemoteRef: RELEASE_3_22
RemoteSha: 77ef3f0e3cf06a7bc0c4d8dc32ce7e4437035e50
NeedsCompilation: no
Packaged: 2025-11-13 07:39:23 UTC; root
Author: Fabrício Almeida-Silva [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-5314-2964>),
  Yves Van de Peer [aut] (ORCID: <https://orcid.org/0000-0003-4327-3730>)
Maintainer: Fabrício Almeida-Silva <fabricio_almeidasilva@hotmail.com>
Built: R 4.5.2; ; 2025-11-13 07:41:07 UTC; windows
