BRD4df                  This is data to be included in my package
BRD4df_full             This is data to be included in my package
chargeCorrelationHdx    Charge states should have correlated
                        incorperation but they need not be exactly the
                        same
compatibleUptake        Check whether deuterium uptakes are compatible
                        with difference overlapping sequences.
computeMassError        Empirical versus theoretical mass errors
computeMonotoneStats    Monotonicity based outlier detection.
exchangeableAmides      Compute exchangeable amides.
fourierIsotope          fourier transform approach to computing
                        isotopic distribution
generateSpectra         generate Spectra using a fourier transform
hdxmsqc                 A package to perfrom quality control for
                        mass-spectrometry based hydrogen deuterium
                        exchange experiment.
imTimeOutlier           Ion Mobility time based outlier analysis
intensityOutliers       Intensity based deviations
isMissingAtRandom       Missing at random versus missing not at random
isotopicDistributionHDXfourier
                        fourier transform approach to computing
                        isotopic distribution
plotImTimeOutlier       Ion Mobility time based outlier analysis
plotIntensityOutliers   Intensity based deviation plot
plotMassError           Mass error plot
plotMissing             missing value plot
plotMonotoneStat        Monotonicity based outlier detection, plot.
plotrTimeOutliers       Retention time based analysis
processHDE              Function to curate and HDExaminer file so that
                        in contains all the information in a sensible
                        format. This object can then be
                        straightforwardly passed to a object of class
                        'QFeatures'
qualityControl          Quality Control table function. Generate a
                        table that collates quality control metrics
rTimeOutliers           Retention time based analysis
replicateCorrelation    Correlation based checks
replicateOutlier        Correlation based checks
spectraSimilarity       Spectral checking using data from HDsite
