TumourMethData
This is the development version of TumourMethData; for the stable release version, see TumourMethData.
A Collection of DNA Methylation Datasets for Human Tumour Samples and Matching Normal Samples
Bioconductor version: Development (3.21)
TumourMethData collects tumour methylation data from a variety of different tumour types (and also matching normal samples where available) and produced with different technologies (e.g. WGBS, RRBS and methylation arrays) and provides them as RangedSummarizedExperiments. This facilitates easy extraction of methylation data for regions of interest across different tumour types and studies.
Author: Richard Heery [aut, cre] (ORCID:
Maintainer: Richard Heery <richardheery at gmail.com>
citation("TumourMethData")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("TumourMethData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TumourMethData")| getting_tumour_methylation_from_TumourMethData | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CancerData, ExperimentData, ExperimentHub, Homo_sapiens_Data, MethylSeqData |
| Version | 1.5.0 |
| License | Artistic-2.0 |
| Depends | R (>= 4.2), SummarizedExperiment |
| Imports | ExperimentHub, GenomicRanges, HDF5Array, R.utils, rhdf5 |
| System Requirements | |
| URL | https://github.com/richardheery/TumourMethData |
| Bug Reports | https://support.bioconductor.org/tag/TumourMethData |
See More
| Suggests | ggplot2, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TumourMethData_1.5.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/TumourMethData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TumourMethData |
| Package Short Url | https://bioconductor.org/packages/TumourMethData/ |
| Package Downloads Report | Download Stats |